Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq115302 217 1e-51 seq16074 87.8 2e-12 >seq115302 Length=2783 Score = 217 bits (240), Expect = 1e-51 Identities = 372/540 (69%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 13853 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912 || ||||||||| || | ||||||||||||||| || | || || ||||| || || Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 13913 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972 |||||| |||||||| || |||||||| | || |||||||| ||||||||||| | || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 || ||| |||||| ||||| || || || || || || || | ||||| ||||| Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14092 || |||| | || ||||||| | ||||| |||| ||| ||||| | | | Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 14093 CATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATC 14152 | ||||||| ||||| |||||| | || |||||| | | | || || ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 14153 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 ||| || | || ||||| || || || | |||||||| || || ||||| || || || Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 14213 GCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAAC 14272 || | ||||| | ||| ||||| | || | ||| | |||||||| || || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 14273 TATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14332 ||||||||| ||||| |||||||| | || || |||||||| | || Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 14333 GTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 || ||| | |||||| | | || || || || || ||||| ||| |||||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Score = 138 bits (152), Expect = 1e-27 Identities = 210/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 13500 AACTTTATAATATTCAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCT 13559 || ||| || |||||| | ||| || || |||||| || ||| || || || Sbjct 1372 AAATTTTCAAAATTCAAGTTTATCTAGAAGTCGGCATCTAGTGTAAACACGTTGTCCAAA 1431 Query 13560 TTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTT 13619 ||| || ||||| || ||| |||||||| ||| ||||||| ||||| || ||| Sbjct 1432 CGGTTCGACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTT 1491 Query 13620 TTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTA 13679 || || |||| |||||| |||||| || | ||||||||| | | | | | | ||| Sbjct 1492 TTGCCCTCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTT 1551 Query 13680 TCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAA 13739 ||| || | ||| ||||| | |||||| | ||||||||||||||||||||| || Sbjct 1552 TCAATTCCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAAT 1611 Query 13740 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTAT 13798 |||||||||||||| | | ||||| || | || |||||||| |||| ||| || Sbjct 1612 TCACAATTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 >seq16074 Length=5602 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 131659 GATCCAAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAACGGT 131718 ||||| ||||| ||||||||||| || || ||||| || | ||| ||||| || Sbjct 4499 GATCCTAAAAAAATGCATAATGGTACCATCGAATATACTTCTCGTGATGCCCATAATGGC 4440 Query 131719 GTATCCCCGTCTAGGCGAGGAGATTTAGAAATTTTAGGATATTGTATAATAAAATGGTTA 131778 || || | | ||||||||||||||||||||| || || | |||| | ||| | Sbjct 4439 GTT---CCAACAATGCGAGGAGATTTAGAAATTTTGGGCTACAATTTAATTCACTGGCTT 4383 Query 131779 GGCGGTAAATTGCCATGGGAA-AATGATTTaaaaaa 131813 ||||||||||| ||||||||| ||| |||| |||| Sbjct 4382 GGCGGTAAATTACCATGGGAATCATG-TTTAGAAAA 4348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478607451337600