Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq115302 217 1e-51 seq16074 84.2 2e-11 >seq115302 Length=2783 Score = 217 bits (240), Expect = 1e-51 Identities = 372/540 (69%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 13641 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700 || ||||||||| || | ||||||||||||||| || | || || ||||| || || Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 |||||| |||||||| || |||||||| | || |||||||| ||||||||||| | || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||| || |||||| ||||| || || || || || || || | ||||| ||||| Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 || |||| |||| ||||||| | ||||| |||| ||| ||||| | | | Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 13881 CATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC 13940 | ||||| | |||||||||||| || |||||| | | | || || ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 13941 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 ||| || | || ||||| || || || | ||||| || || || ||||| || || || Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||| | ||||| | ||| || || | || | ||| | || ||||| || || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 |||||||||| ||||| |||||||| | || || |||||||| | || Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || ||| | |||||| || | || || || || || ||||| ||| |||||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Score = 132 bits (146), Expect = 5e-26 Identities = 195/276 (71%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370 ||| || || |||||| || ||| || || || ||| || ||||| || ||| Sbjct 1395 CTAGAAGTCGGCATCTAGTGTAAACACGTTGTCCAAACGGTTCGACATAACACCACATTT 1454 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| ||| ||||||| || || || ||||| || |||| |||||| ||| Sbjct 1455 CTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAATGATATGAATTC 1514 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| || | |||||||||| | | | | | | ||| ||| || | ||| | ||| Sbjct 1515 CATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAATTCACCGAGTAA 1574 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | |||||| | ||||||||||||||||||||| || |||||||||||||| | | || Sbjct 1575 GCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAATTCATACCAAGCATGTT 1634 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTAT 13586 ||| || | || |||||||| |||| ||| || Sbjct 1635 TACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 >seq16074 Length=5602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/169 (72%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 131353 AGAGTATAAACGAGATCCCAAAAAGATGCATAATGGAACAATAGAGTACACAAGTATAGA 131412 ||| | ||||| ||||| ||||| ||||||||||| || || || || || | || Sbjct 4512 AGATTTTAAACCGGATCCTAAAAAAATGCATAATGGTACCATCGAATATACTTCTCGTGA 4453 Query 131413 TATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTAT 131472 | ||||| || || ||| | | |||||||||||| |||||||| || || | | Sbjct 4452 TGCCCATAATGGCGT---TCCAACAATGCGAGGAGATTTAGAAATTTTGGGCTACAATTT 4396 Query 131473 AATAAAATGGTTAGGTGGTAAATTGCCATGGGAA-GATGATTTAAAAAA 131520 ||| | ||| | || |||||||| ||||||||| ||| |||| |||| Sbjct 4395 AATTCACTGGCTTGGCGGTAAATTACCATGGGAATCATG-TTTAGAAAA 4348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477470912280960