Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq105237 113 3e-20 seq77412 107 1e-18 seq47011 107 1e-18 seq53184 95.1 9e-15 >seq105237 Length=11214 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | || ||||||||| | ||||||||| ||| Sbjct 9109 CCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGAC 9050 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | || || ||||||||||| |||||||| | || |||||||| | || Sbjct 9049 AATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGA 8990 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| || ||||||| | ||| ||| || | ||||| Sbjct 8989 ATACCTTCTTTATC-CTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGAC 8931 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||||| ||||| ||||||||||| Sbjct 8930 CTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq77412 Length=2780 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || || ||||| | ||||||||||| Sbjct 117 CCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAT 176 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || ||||||||||| |||||||| || || || |||||||| | || Sbjct 177 AATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 236 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||||| | ||| |||||| | || || Sbjct 237 ATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACT 296 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||||| ||||| || ||||||||||| Sbjct 297 TCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||||||| |||| |||||||| | ||||| ||||| Sbjct 629 GCCACCACGAAGACGAAGTACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 688 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTT 42991 |||||||| | || ||||||||||| || ||||| || || || |||| Sbjct 689 TAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTT 738 >seq47011 Length=3271 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| ||||| | ||| |||||||| | ||||||||| ||| Sbjct 1461 CCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGAC 1520 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || || ||||| || || |||||||| | || Sbjct 1521 AAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGA 1580 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | ||||| | | | || ||| | ||| || Sbjct 1581 ATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACC 1640 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || ||||| || || ||||| ||||| |||||||| Sbjct 1641 TCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq53184 Length=5087 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | ||| |||||||| | |||||||| ||| Sbjct 4652 CCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGAC 4711 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || || |||||||| || ||||| || || || |||||||| | || Sbjct 4712 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 4771 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || |||| || | ||| || ||| | || || Sbjct 4772 ATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACC 4831 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || |||| ||| || || ||||||||||| Sbjct 4832 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || |||||||| | ||||| ||||| Sbjct 4880 CCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGAT 4939 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 4940 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGT 4999 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||| || | ||| |||||| | || || Sbjct 5000 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACT 5059 Query 43063 TCTACCGTTATAGTTTTTCCGGTTA 43087 || | || || || || ||||||| Sbjct 5060 TCCAAAGTAATTGTCTTACCGGTTA 5084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380501066966112