Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq146712 432 5e-116 seq115302 289 4e-73 >seq146712 Length=6971 Score = 432 bits (478), Expect = 5e-116 Identities = 1143/1750 (65%), Gaps = 57/1750 (3%) Strand=Plus/Plus Query 70786 TTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCT---TTCGTACGTAGATAG 70842 |||| ||| || | ||||| || || || | ||| ||| ||||| |||||||| Sbjct 2375 TTTTGCTTATCAACGGTAAATTGTAT---AGCGTTTGCAGCTGGCTTCGTGCGTAGATAA 2431 Query 70843 TACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 70902 ||||| || ||||||| || | |||| || |||||||| ||| ||||| || Sbjct 2432 TACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTTCCG 2491 Query 70903 TAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTG 70962 || | || ||||||| ||| ||||| | ||| || |||||||| || || || || | Sbjct 2492 TAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGA 2551 Query 70963 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 71022 || || ||||| || || | ||| || || | |||||| | |||||||||| | Sbjct 2552 TCCGCGGCCATCTTAATTAGCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCA 2611 Query 71023 TTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCA------------------ 71061 ||| |||| || | | | |||| ||||| || ||| Sbjct 2612 CGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTGAACCATTTGCCGCAATANTCAAT 2671 Query 71062 -------------CCATCT---GCAATAATCCTATTTTTGATCTCTTCATTCCATAATTT 71105 |||| | ||||||| | |||||| || || |||| ||| | | Sbjct 2672 ATTTTGAATTAAACCATTTACCGCAATAACGCGATTTTTTATGTCATCATCCCACAGATC 2731 Query 71106 TCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATAC 71165 | |||||||| | | | | ||| | || |||||||||||||| ||||| | ||| Sbjct 2732 TAATTCGGTTAAGTCCTTTATCAAATGGTGGTTTACTACTTGAAATTCACCAGAAAGTAC 2791 Query 71166 TCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTG 71225 | | || || | || ||||| ||||| | || |||||||||||||||||||| Sbjct 2792 ACGTCTCGTATATACGTTTGACGTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTG 2851 Query 71226 AGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG 71285 || || || ||||||||||| || || | | ||| |||||||| ||||| ||| Sbjct 2852 TGCGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCT-TCG 2910 Query 71286 -GATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNN 71344 |||||| | || | | ||||| ||| | ||| | ||| Sbjct 2911 CGATTTTTGCCTTCAACGCGGTCCAATCCCATAAATCTGTTGGAGTTTTATTCCACATAT 2970 Query 71345 NNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTT 71404 ||||| ||||| | |||| ||||||| ||||| | ||| || Sbjct 2971 CATACTGCAAGATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGTAGGTGCCTAATT 3030 Query 71405 TTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCT 71464 |||| |||||||| ||||| || |||||||| || || || || || |||||||| | || Sbjct 3031 TTTCAGCTAGTTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCT 3090 Query 71465 TATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTG 71524 || | |||||| || || ||| ||| |||| | | || || || || | Sbjct 3091 GGTTTAATAATTGTGCCTCTTCACTTTCATATGCATAACGCATTAATATGAATGCATCAG 3150 Query 71525 CTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTG 71584 | | ||||| || ||||| || || |||| |||||| |||| ||| || ||||| | Sbjct 3151 CCATACCTTGTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTTTGCTTCAG 3210 Query 71585 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCA 71644 | || ||||| ||||||| ||| || |||||||| | |||| | | | ||| | Sbjct 3211 GGATTGGATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGTAA 3270 Query 71645 CATCCTTTAGTTTGAGAAAATCAAATCTCCCATC--TA----TTACAAACACGTTCAAGG 71698 | || || | ||| |||||| || | || || ||||||||| || | || Sbjct 3271 CTTCTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAACATTTACAAACATATTGAGGG 3330 Query 71699 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAG 71758 | | || || | ||||||||||||||| |||| | | ||| || |||||| | Sbjct 3331 CGATTGACGCTAAATTACAAACGGCTACTTCATCTTTTGACGAAAATTCTACAATTTCGG 3390 Query 71759 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 71818 | || | ||| ||| || ||||| || | |||||||||||| ||| ||||| | Sbjct 3391 TACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATTACAAG 3450 Query 71819 CATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 71878 |||| ||||| || ||| ||||| |||||||||| ||| ||| ||||| || | || Sbjct 3451 CATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAGCATACC 3510 Query 71879 AGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 71938 | | | | || || | | | | | ||| ||||| |||| ||||| Sbjct 3511 ATAGAGATTGGGCTTTCACTTTGCGTAGAAAACGGCCTTCGCTTTCATATTTCTCATATA 3570 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||| || || ||||||||| || || | ||||||||||| | |||||||| | Sbjct 3571 GTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTCGTGAGGACACATTA 3630 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 | ||||| ||| ||| | | || || |||||||| | || || ||||| || || Sbjct 3631 AAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCATAGTGCAT 3690 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 ||| | ||||| || ||| ||||| || |||||||| || || | ||| || || Sbjct 3691 AAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATCAAGAAATT 3750 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | ||||||| |||||| ||||| | || ||||| | | || || |||||||| | Sbjct 3751 CAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACGTTTGTTAC 3810 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | || ||||| | ||| | ||| || ||||| || ||||| |||| || | || |||| Sbjct 3811 CACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGGTACAAGCCCAT 3870 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGA 72296 | || |||||| || || | ||||| ||| | || ||||| | || ||| Sbjct 3871 TAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATACAATGAACATT-- 3928 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||||| || ||||| ||| || |||||||| ||| |||| || |||||||| || Sbjct 3929 AAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGTATCATAAAT 3988 Query 72357 GCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 || || |||||||| ||| || |||||| | ||| || || | || | ||| Sbjct 3989 ACCATCGATACTATCTTCCGACATTGTTAA-CAAAAAGCATGACGATAACTGTGGTCGAG 4047 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 ||||| || ||| | || || || || || || || || |||| || | || || Sbjct 4048 GTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAATATCTTTCCGATAATAAAT 4107 Query 72476 TGTACGTCTC 72485 ||||||| || Sbjct 4108 TGTACGTTTC 4117 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 ||| || || | ||||| ||||| | |||||||||||||||||| | || || || Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAATTTTTCGTTT 4570 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 ||||||||||| || ||| |||||| |||||||| |||||||| ||||| ||| || Sbjct 4571 AATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAATC 4630 Query 72630 TCGTTCGTAAATAATAACCGAATT 72653 || || ||||| ||| | ||||| Sbjct 4631 ACGATCATAAATTATAGCTGAATT 4654 >seq115302 Length=2783 Score = 289 bits (320), Expect = 4e-73 Identities = 398/554 (72%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 ||||||||||||||| | ||| || ||||| ||||| | || || ||||| |||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 |||||| ||||| || | || ||||| |||||||| ||||| | ||||||||| || || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 || ||| |||||| |||||||| || || || || ||||||| | || ||| | Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 42226 ACCGGC--ACTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | || | | | || | |||| | | | ||||| || || |||||||||||||| || Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 | ||||| | |||||| || | | ||| || || |||| | ||| ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || | |||||| ||||| || ||||||| ||||| ||||| || ||||| |||||||| Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462 ||| | || ||||| | || |||||| | || |||||| ||||||||||||| || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 42463 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGG 42522 || || ||| ||||| ||||| || | ||| || ||||| | ||| ||| Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 42523 TGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 | ||| | || ||||||| || ||||| |||| || |||||||| | |||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Query 42583 TGATGCTTCTGCCT 42596 ||||||||| |||| Sbjct 2286 TGATGCTTCCGCCT 2299 Score = 118 bits (130), Expect = 1e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 |||||||| || ||| || ||||| |||| ||||||||| ||||| || || || Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 ||||||||||| ||||||||| | || ||||| | || |||||||||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||||||| | || | ||| || | || || |||||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT 41991 ||||| || | | || ||||| | || | || | ||| ||||||||||| Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669571553056640