Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq31749 116 5e-21 seq115302 84.2 3e-11 >seq31749 Length=11801 Score = 116 bits (128), Expect = 5e-21 Identities = 293/438 (67%), Gaps = 11/438 (3%) Strand=Plus/Plus Query 49811 ATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGCAGGCGTTTTACGTG 49870 ||||||||||| |||||||||| ||||| || | ||||| |||||||| |||| || Sbjct 6697 ATGTTTCTATATATGATGGCCTATATGACAACGTCCGTCATTGAGCAGGCATTTTTTGTT 6756 Query 49871 TACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCCACAACATTAGCCA- 49929 || | ||||| || || |||||||| || ||| | ||| || ||| || | Sbjct 6757 TATCGTGCGTGTCGTGTTAATCATGGCTATTCCGAAGAAATCTGCAGTAATATT-GCTAA 6815 Query 49930 --GTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTCATCAGTGGAAC 49987 |||| ||||| || || ||| ||| |||||||||| | || ||||| ||| || Sbjct 6816 TTATACG--GACATAAAAAAGGAAGTGCAGAAGACTGTGTCGAATTTCCATCAATGGGAC 6873 Query 49988 GGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGATCCTATAGTGAT 50047 |||| ||||| | ||||| |||| ||||| ||||| | || || | ||| Sbjct 6874 AGTGTTTTAGGTCATATTGTGCCAATTATTTTGGCGCTTTTCATTGGGTCGTGGTCCGAT 6933 Query 50048 AGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGT-AGGTAAACTCTTTTTCTCGGC 50106 |||| ||| | || | | | | | ||| | || || ||||| | | || | Sbjct 6934 CGGCGAGGTCGCAA-ACTTCCNTTGATTATGGGTTTGTGCGGAAAACTAATGTATTCCGT 6992 Query 50107 AATGCTAACCGTAAACA-GTCTCAA--GAGCTGGCCCGTAGAGTATATAATCTACACGGC 50163 |||| | || |||| || |||| || ||||| | || ||| | || | ||||| Sbjct 6993 AATGATTGTGGTGAACACGTATCAAACGACATGGCCATTGGAATATGTGATTTGGACGGC 7052 Query 50164 ATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGTGCTTTGCCTA 50223 | | ||||| |||| || |||||||| ||| | | ||||| || | || |||||||| Sbjct 7053 AACATTTCCAGGTGCCCTAACCGGAGCTGATGTCGCAATATTTGCGTCATGTTTTGCCTA 7112 Query 50224 CATTGCCGATGTGTCGAC 50241 || | ||| | ||||| Sbjct 7113 TATCTCGGATATATCGAC 7130 >seq115302 Length=2783 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || |||||||||||| |||| || || | || || | |||| |||| ||||| || | Sbjct 1670 ATTGAACAAGAGTTTTTAACAGATGCCTTGCCAGTAAACATGCTTGGTATGAATTGTGAA 1611 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG---ATTGGC 125774 | |||| | || || ||||||||||| ||||| |||| || ||| |||| Sbjct 1610 TTGATGTCTCAATATATTGAGTTTGTGGCTGATCGCTTACTCGGTGAATTGGGAATTG-- 1553 Query 125775 CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGT 125834 || |||||||| |||| ||||| || | |||||| ||||||| | ||||| Sbjct 1552 -AAAAAATTTACAAGACCAAAAATCCATTCAACTTCATGGAATTCATATCATTGGAGGGC 1494 Query 125835 AAGACCAACTTTTTCGAGAAGAAGGT 125860 || || || || ||||| || || || Sbjct 1493 AAAACAAATTTCTTCGAAAAAAAAGT 1468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739328233920640