Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq53184 147 2e-30 seq47011 134 1e-26 seq77412 127 1e-24 seq105237 118 8e-22 >seq53184 Length=5087 Score = 147 bits (162), Expect = 2e-30 Identities = 161/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || || ||||| ||||| || ||||| ||||||||||| | ||| || | |||| Sbjct 4670 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCG--ACAATGTACGACCATCTT 4727 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 |||||||||| ||||| | || ||||||||||| || ||||||||||||||| || Sbjct 4728 CTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTT 4787 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||||| |||||| | || ||||||||| ||| || ||||| || || |||| Sbjct 4788 GAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTT 4847 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || | ||| ||||| |||||||||||| Sbjct 4848 TACCAGTTAAAGTCTTTACGAAAATTTGCATA 4879 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||||||||| || || |||||||| || ||||| || || ||| | | || Sbjct 4438 TAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATC 4497 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||||| |||||||| ||| | || |||||||||||||| ||||||||||||||| || Sbjct 4498 TTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATC 4557 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| || ||| | || |||||||| ||| || ||||| || || || Sbjct 4558 TTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGT 4617 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || | ||| || || |||||||||||| Sbjct 4618 TTTACCAGTTAAAGTCTTGACGAAAATTTGCATA 4651 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || ||||| |||||||| ||| || | | | ||||| Sbjct 4898 ACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCC 4957 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| ||||| | || ||||||||||| || ||| ||||||||||| || Sbjct 4958 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATCTTGG 5017 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||| |||| ||||| ||| |||||| || || ||||| || ||| Sbjct 5018 ATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGTCTTA 5077 Query 15335 CCTGT 15339 || || Sbjct 5078 CCGGT 5082 >seq47011 Length=3271 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||| ||||| || ||||| || |||||||| | | | | | ||||| Sbjct 1479 ACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTCC 1538 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | || ||||||||||| || |||||| ||||||||||| Sbjct 1539 AATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTGG 1598 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| |||| || |||||| || || || | ||| ||||| || Sbjct 1599 ATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTTT 1658 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| |||||||| Sbjct 1659 CCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq77412 Length=2780 Score = 127 bits (140), Expect = 1e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || |||||||| |||||||||||| || | | | ||||| Sbjct 134 AACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTC 193 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-AC 15272 |||||||| || || | || ||||||||||| || |||||||||||||||||| Sbjct 194 CAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 253 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 | ||||||| || ||| |||| || || || |||||| || | || || || | Sbjct 254 GATTTTTGCT-TTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCT 312 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || | |||||||| |||||||||||| Sbjct 313 TACCGGTTAAGGTTTTTACGAAAATTTGCATA 344 Score = 102 bits (112), Expect = 6e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| ||||| || ||||| |||||||||||| || | | | |||||| Sbjct 363 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCT 422 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||||||| | || | ||||||||| || |||||||||||| ||||| Sbjct 423 AATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 482 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATC 15303 ||||| ||| || ||| | || || ||||| Sbjct 483 ATTTTAGCT-TTGACATTCTCAATTGTATC 511 >seq105237 Length=11214 Score = 118 bits (130), Expect = 8e-22 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || ||||| || |||||||| | |||| | |||||| Sbjct 9091 ACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTCT 9032 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||||||||| || | || | ||||||||| || |||||| |||||||| || | Sbjct 9031 AATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGA 8972 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || ||||| ||| || || | ||| ||||| || Sbjct 8971 ATTTTAGCT-TTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTT 8913 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || |||| ||||||||||| |||||||| ||||| || Sbjct 8912 GCCCGTCAATGTTTTTACAAAGATTTGCAT-TTTGACAA 8875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361354371279024