Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq105237 87.8 1e-12 >seq105237 Length=11214 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || || || ||||||||||| ||||||||||| | || |||| || | || || Sbjct 9092 CACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTC 9033 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 | ||||| || ||| |||| || | || ||||| || | || ||||| || Sbjct 9032 TAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 8973 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| ||| || | | | ||||| || || || | ||| ||||| || Sbjct 8972 AATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTT 8913 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || ||||| ||||| ||||||||||| Sbjct 8912 GCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413628649832416