Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq47011 111 1e-19 seq77412 100 2e-16 seq105237 98.7 6e-16 seq53184 98.7 6e-16 >seq47011 Length=3271 Score = 111 bits (122), Expect = 1e-19 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 ||||||| | | || | ||| ||||| | ||| || || ||||| ||||||||||| | Sbjct 1459 CACCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCG 1518 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 |||| | | || |||||||| || ||| || ||||||||||| || || | | Sbjct 1519 ACAAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTG 1578 Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | || |||||||| || | | | ||| || || ||| || || ||| || | Sbjct 1579 GAATCCCTTCTTTGTCTTGGATTTTAGCC---TTGACATTTTCGATAGTATCGGATGGCT 1635 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGG 33377 ||| || || ||||| || ||||||||||| |||||||| || ||||||||| | || Sbjct 1636 CAACCTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCATGATGAT-- 1693 Query 33378 TTAAT 33382 ||||| Sbjct 1694 TTAAT 1698 >seq77412 Length=2780 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||| || |||||||| || |||||||| || || | | || ||| Sbjct 135 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCC 194 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| || || ||| ||||||||||| || || | || || |||||||| || | Sbjct 195 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 254 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || ||| ||| ||||| |||| || || ||||| || || Sbjct 255 ATTTTTGC---TTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTC 311 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | |||||||||||||||||||| Sbjct 312 TTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq105237 Length=11214 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG--GTCA 33217 ||||||||| ||||||||||| ||||| ||||||||||||||||| || || || Sbjct 9092 CACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAA--TGTTCTGCCATCT 9035 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 || ||||| || || ||| || | |||||| || || | || || |||||||| || Sbjct 9034 TCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCC 8975 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| || ||| ||| || || |||| || || || || || || Sbjct 8974 TGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTC 8915 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| | |||||||| || |||||||| || Sbjct 8914 TTGCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq53184 Length=5087 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | ||| || || ||||| || |||||||| ||||| | | || || Sbjct 4670 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCT 4729 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| ||| ||||||||||| || || | || || |||||||| || | Sbjct 4730 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGA 4789 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| | | ||| || ||| |||| ||| || | || || ||||| Sbjct 4790 ATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTA 4849 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| ||||||||||||||||| Sbjct 4850 CCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||| || || ||||| || ||||| || || || | | || ||| Sbjct 4898 ACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCC 4957 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| ||| ||||||||||| || || | ||||| |||||||| || Sbjct 4958 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATCTTGG 5017 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| ||| ||| |||||| |||| || |||| ||| || || || Sbjct 5018 ATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGTCTTA 5077 Query 33341 CCCGT 33345 || || Sbjct 5078 CCGGT 5082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318051614299872