Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq77412 125 5e-24 seq53184 116 3e-21 seq105237 100 2e-16 seq47011 87.8 1e-12 >seq77412 Length=2780 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||||||||||| || |||||| |||| ||| |||| ||| Sbjct 135 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCC 194 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || ||||| || || | || | |||||||| ||| Sbjct 195 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 254 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| |||||| | ||| || |||| || || || || | || ||||| ||| Sbjct 255 ATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCTTA 314 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || || |||||||| Sbjct 315 CCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq53184 Length=5087 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| || ||||| || || ||||| ||| ||| |||| || Sbjct 4670 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCT 4729 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || ||||| || || | || | |||||||||||| | Sbjct 4730 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGA 4789 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| ||||| | ||| || || || | || ||||||||| Sbjct 4790 ATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTA 4849 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| || || |||||||| Sbjct 4850 CCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || ||||| || || ||||||||||||||| || || | ||| |||| Sbjct 4438 TAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATC 4497 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | ||||| || || || || || ||||| ||||| | || | ||||||||||| Sbjct 4498 TTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATC 4557 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||| |||||| | ||| ||||| | ||| || || || | || ||||| Sbjct 4558 TTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGT 4617 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| ||||||||||| || || |||||||| Sbjct 4618 TTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || || ||||| || || || ||| |||| ||| |||| ||| Sbjct 4898 ACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCC 4957 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || ||||| || || | |||| |||||||||||| Sbjct 4958 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATCTTGG 5017 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | ||| || || | || || || || | |||||||| ||| Sbjct 5018 ATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGTCTTA 5077 Query 44093 CCGGTTAA 44100 |||||||| Sbjct 5078 CCGGTTAA 5085 >seq105237 Length=11214 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||||| || ||| ||||| ||||| ||||| ||| | |||| || Sbjct 9092 CACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTC 9033 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||||| |||||||| || | ||||| || || | || | |||||||||||| Sbjct 9032 TAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 8973 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| |||||| | ||| ||||||| || || || || | || || || || Sbjct 8972 AATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTT 8913 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || ||||| |||||||| Sbjct 8912 GCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq47011 Length=3271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| ||||| || ||| || ||||| ||||| ||||| || |||| |||| || Sbjct 1478 CACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTC 1537 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||||||| || || || || || ||||| || || | || | |||||||| ||| Sbjct 1538 CAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTG 1597 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| ||||| | | | |||||| | ||||| || || | || || || || Sbjct 1598 GATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTT 1657 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | || || ||||| ||||||||| Sbjct 1658 TCCCGTAAGTGTTTTTACAAAGATTTGCATG 1688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353969627719872