Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq105237 114 1e-20 seq77412 105 6e-18 >seq105237 Length=11214 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||||| ||| || || ||||| || |||||||| || ||| | |||||| Sbjct 9092 CACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTC 9033 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||||||||||| ||| |||| || | |||||||| || | |||||||| || Sbjct 9032 TAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 8973 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| ||| || | ||| | ||| ||||| || | ||| ||||| || Sbjct 8972 AATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTT 8913 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||| ||||| ||||| ||||| ||||||||||| Sbjct 8912 GCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq77412 Length=2780 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 |||||||| ||||||||||||||||| |||||||||||| ||| | | || ||||| Sbjct 135 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCG--GATAATGTACGACCATCTT 192 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 |||||||||| || ||| | || | | |||||||| || | ||||||||||| Sbjct 193 CCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTT 252 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 |||||| ||| || | ||| | || ||||| ||| | || || || | Sbjct 253 GGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCT 312 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||| || ||||| || ||||||||||| Sbjct 313 TACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418631630012784