Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq115302 210 2e-49 >seq115302 Length=2783 Score = 210 bits (232), Expect = 2e-49 Identities = 384/560 (69%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 13132 TAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAG 13191 || ||| |||||||| | ||| |||||||||||||| |||||||| ||||| |||||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 13192 CTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC 13251 ||||| |||||||| | ||| ||||| || || |||||||| | ||||||||| | || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 13252 -AAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCAT 13310 |||| | | ||| ||| |||||||| || ||||| || || || | | ||||||| Sbjct 1866 GAAACTCCCACTAAAGAAA-ATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAA 1924 Query 13311 ACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGT 13370 | | ||| || ||||| | | |||||||| ||||| | ||| || || Sbjct 1925 AATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATG 1984 Query 13371 TCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTAT 13430 | | |||| | || || |||||| | | || || ||| ||||| |||| Sbjct 1985 GTAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTAT 2044 Query 13431 CTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAA 13490 | || | | || ||||| || ||||||| ||||||||| || ||||| || || || | Sbjct 2045 CAATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGA 2104 Query 13491 AACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAA 13550 |||| | || || | || |||||||| | || | ||| |||| |||||||| | Sbjct 2105 AACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTA 2164 Query 13551 CTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----- 13605 | || || ||| || || ||||| ||||||| |||| |||||| | ||| Sbjct 2165 CAATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACG 2224 Query 13606 GTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGT 13665 ||||| || | |||||| | | |||||||||| || || || ||| | || Sbjct 2225 GTTTTAGTGCATC-----CCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGT 2279 Query 13666 CCAAAAAGAAGCAACAGCCT 13685 |||||| || || | |||| Sbjct 2280 CCAAAATGATGCTTCCGCCT 2299 Score = 100 bits (110), Expect = 2e-16 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 12842 TTTGACATAACAG-ACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 || ||||||||| |||||| | |||||||| ||| ||||||| || || |||||||| Sbjct 1435 TTCGACATAACACCACATTTCT-GATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTT 1493 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT 12960 || || || || || |||||| || | ||| |||||||| | || ||||| Sbjct 1494 GCCCTCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTC 1553 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | || ||||| | || | ||||| |||||||| || || || ||| || || Sbjct 1554 AATTCCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTC 1613 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTAT 13077 ||| ||||| || | | ||||| |||| || ||||||||||| | || ||| || Sbjct 1614 ACAATTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430000878527328