Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq115302 197 3e-45 seq105237 178 3e-39 seq53184 163 7e-35 seq98090 159 8e-34 seq77412 150 4e-31 seq47011 143 6e-29 seq15552 98.7 2e-15 >seq115302 Length=2783 Score = 197 bits (218), Expect = 3e-45 Identities = 371/542 (68%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || || |||||||| | |||||||| || || || | ||| | |||| Sbjct 2299 AGGCGGAAGCATCATTTTGGACAGCTGAAGAAGTTGACCTATCAAAAGACATGGCTGATT 2240 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 || | ||||||| ||| | ||||| || | | ||||| ||||| |||| Sbjct 2239 GGGATGCACTAAAACCGTCTGAACGTCACTTTATTTCGCACGTACTTGCATTTTTCGCAG 2180 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 ||||||||| || ||||||||| |||| || ||| | ||||| || || || Sbjct 2179 CATCTGATGGTATTGTAAACGAAAATTTAGTTGAACGTTTCAGCCAAGAAGTTCAAATAA 2120 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | ||||| | ||||| ||||| || || || || || |||||| ||||||| ||||||| Sbjct 2119 CCGAAGCACGTTGTTTCTACGGGTTTCAAATTGCCATGGAAAATGTTCATTCCGAGATGT 2060 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGA-AAAGACTATTTTCT 269050 ||||||| |||| ||||| ||||| ||| | |||||| |||| |||| | Sbjct 2059 ACAGTCTTCTAATTGATACGTATATCCGAGAT-----CCAAAAGAGCGTGACT-TTTTAT 2006 Query 269051 TCTATG-----AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA 269105 || ||| |||| | ||||| | ||| ||| |||| ||||| || |||||| Sbjct 2005 TCAATGCCGTTGAAACTTTACCATGTGTAAAAAAGAAAGCTGACTGGGCCCTACAATGGA 1946 Query 269106 T---AAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 | || | | ||| || || ||| | | |||| || || || || ||||| | Sbjct 1945 TTTCAAGCAAATCGGCGAATTTTGGTGAACGTATTATTGCATTCGCAGCGGTGGAAGGAA 1886 Query 269163 TATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAG 269222 | |||||| ||| ||| || | || ||||||||||| ||| | ||||| ||||||| Sbjct 1885 TTTTCTTTAGTGGGAGTTTCGCATCCATATTTTGGTTGAAAAAACGTGGCCTCATGCCAG 1826 Query 269223 GATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTT 269282 | || || || || |||||| | ||| || |||||||| |||||||| || || || | Sbjct 1825 GTTTGACATTTTCGAACGAACTAATATCAAGAGACGAAGGATTACACTGTGATTTTGCGT 1766 Query 269283 GT 269284 || Sbjct 1765 GT 1764 >seq105237 Length=11214 Score = 178 bits (196), Expect = 3e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||||||||| || || || || ||||| || ||||| | ||||| || ||| Sbjct 9094 AGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCT 9035 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| |||||| || |||||||| || | |||||||| || || || |||||||||||| Sbjct 9034 TCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCC 8975 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| |||||||| | ||||| ||||| ||||| || || || ||| Sbjct 8974 TGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTC 8915 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || | |||||||||||| || ||||||||| Sbjct 8914 TTGCCCGTCAATGTTTTTACAAAGATTTGCATTTTG 8879 >seq53184 Length=5087 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | |||||| ||||| |||||||| |||||||| || |||| || ||||| Sbjct 4441 TACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTC 4500 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||| ||||| || || ||||||| | ||||| || || || |||||||||||||| || Sbjct 4501 TAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTG 4560 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| ||||| || | |||||| ||||| ||||||| ||| || || || Sbjct 4561 GATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTT 4620 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || || || ||||| Sbjct 4621 ACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | |||||| | || | ||| ||||| || || || || || || Sbjct 4649 ATACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCC 4708 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||||| |||||| |||||||| |||| | |||||||| || Sbjct 4709 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGT 4768 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||||||||| || | ||||||| ||||| Sbjct 4769 GGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCA 4828 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| ||| || || |||||||| | || ||||| || || ||||| Sbjct 4829 ACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 156 bits (172), Expect = 1e-32 Identities = 148/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | ||| | ||||||||| || || || || ||||| |||| || | ||| || Sbjct 4894 AAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATC 4953 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||| |||||||| |||| | |||||||| || ||||||||||||||||| Sbjct 4954 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATC 5013 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| |||||||| ||||| | ||| ||| |||||||| || | ||||| || Sbjct 5014 TTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGT 5073 Query 104527 CTTACCAGT 104535 |||||| || Sbjct 5074 CTTACCGGT 5082 >seq98090 Length=13235 Score = 159 bits (176), Expect = 8e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 238591 TATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAA 238650 |||||||| | || || ||||| |||| | || ||||||||| | || | |||| Sbjct 10868 TATGGAATGCAGCTCAATTACAATTGGTTAATGAGGGGAAAATGCATGGATTTATGCGAA 10927 Query 238651 TGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATA 238710 |||||||||| ||||| || || ||||||||| | |||| | |||||||| || | Sbjct 10928 TGTATTGGGCGAAAAAAATCCTCGAATGGACTGAAAGTCCAGAAGAAGCTCTCCGAATTG 10987 Query 238711 GTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTT 238770 ||| ||| | || ||| ||| | ||||| | ||||||||| || || || || | Sbjct 10988 CTATCTATTTAAATGATCGATATAGTTTAGACGGAAGGGATCCTAATGGCTATGTGGGCT 11047 Query 238771 GTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAA 238830 ||||||||||||| ||||| | |||||| | |||| |||| | || || ||||| | Sbjct 11048 GTATGTGGTCAATTGGTGGAATCCACGATCAAGGATGGGCTGAACGGCCCATTTTTGGTA 11107 Query 238831 AAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTT 238886 || | | | |||||||||| ||| ||| ||| ||||||||||| |||||| Sbjct 11108 AAATACGCTTCATGAATTATAGTGGATGTAAACGAAAGTTTGATGTAAAAGCTTTT 11163 >seq77412 Length=2780 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | |||||||||||| ||||| || || || |||| || | ||| || Sbjct 131 AAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATC 190 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||| || ||||| |||| | |||||||| || || ||||||||||| || Sbjct 191 TTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 250 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || |||||||| |||||||| | || || |||||||| || || || || || Sbjct 251 TTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGT 310 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || | |||||||| || || ||||| Sbjct 311 CTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq47011 Length=3271 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | ||| ||||| || || ||||| || || || | || | || ||| Sbjct 1476 AGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCT 1535 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| ||||| ||||||| | |||||||| || || || |||||||| || Sbjct 1536 TCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCT 1595 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || |||||||| | |||||| || || ||||| || || || ||| Sbjct 1596 TGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTC 1655 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||||||||||||||| || ||||| Sbjct 1656 TTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq15552 Length=8850 Score = 98.7 bits (108), Expect = 2e-15 Identities = 225/338 (67%), Gaps = 8/338 (2%) Strand=Plus/Minus Query 165097 CGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCT 165156 |||||| | ||||||| | |||||| | | |||||||| |||||||| || | Sbjct 5922 CGATAATGCTGAATGGTCCAGCTGGAATGGACGAGGAGATCCTGTATTACATATTGACTT 5863 Query 165157 AAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGAT 165216 | |||||| || || || | || ||||| || ||||| | |||| || || Sbjct 5862 GGTGAAATGGGCGGACATAATTGTTATTGCACCACTAGATGCAAATACACTAGCAAAAAT 5803 Query 165217 AGCTAACGGTATCTGTAATAA----CTTGTTAACGTGTATAGTTAGAGCGTGGAATATTA 165272 |||| ||||| || |||| ||| || || | |||| | || ||| || | | Sbjct 5802 AGCTTGTGGTATATGCGATAATCTACTTCTT----TGCACAGTTCGGGCTTGGGATGTAA 5747 Query 165273 ATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTG 165332 ||||| ||||| || |||||||| ||||| ||| |||||||||||||| || || Sbjct 5746 CCAAACCGTTACTGTTTTGTCCAGCGATGAACACAAAAATGTGGGAACATCCAATCACCA 5687 Query 165333 AGCAGCATATAGAAACTCTTAAGCATATGGGGTACATAGAAGTTGAGTGTATTGAGAAAA 165392 ||| || || || ||| | ||| | ||| |||| |||| | | |||| |||| Sbjct 5686 AGCCACAAATTGATACTTTGAAGAGTTGGGGATACAAAGAAATACCGGTTATTTCAAAAA 5627 Query 165393 AGCTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCA 165430 || |||||||||| ||| || || |||||| Sbjct 5626 CTTTAATGTGTGGTGATACCGGAGTTGGAGCTATGGCA 5589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148641727707712