Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq123327 206 3e-48 >seq123327 Length=3505 Score = 206 bits (228), Expect = 3e-48 Identities = 509/779 (65%), Gaps = 60/779 (8%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| | ||||||| | ||||| |||||| ||||||| | || || Sbjct 1693 ATTGGGATTTTGGAAAAATGGGGATTGGTGGTCTAGATAAAGAATTTAATGCGATATTTC 1634 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | || || ||||||||| | | |||| ||| | | || ||||||| ||||||| Sbjct 1633 GTCGTGCTTTTGCTTCTCGCGTATTTCCACCGGAAGTTGTTGAACAATTAGGGTGTAAAC 1574 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 | | ||||| ||||| ||| | ||||| || || |||||||| |||||||| || Sbjct 1573 ACGTTAAAGGTATTTTGTTATACGGACCGCCAGGCACTGGTAAAACTTTAATGGCAAGAC 1514 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | ||| | || ||| || || || |||||||||||||| ||| | | | Sbjct 1513 AAATCGG-CAAAATGTTGAATGCACGGGAACCA--AAAATTGTTAATGGCCCTCAGATTT 1457 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | | || ||||||||||| || ||||||||||| || | | ||| || ||||||| Sbjct 1456 TAGATAAGTATGTAGGTGAATCGGAAGCTAATGTACGACGGCTTTTTGCTGATGCTGAAG 1397 Query 164690 AAGAACAAAAGAAAGCAGGTTTAG---CTAGTAAATTACATGTT---------------- 164730 ||||| |||| | |||||| | | | Sbjct 1396 AAGAAGAAAA------ACGTTTAGGACCCAACAGNNNNNNNNNNNNNNNNNNNNNNNNNN 1343 Query 164731 ---------ATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT------ 164775 || |||||||||| ||||||||| |||| ||| | | ||| | Sbjct 1342 NNNNNNNNCATAATTTTTGATGAAATAGATGCTATTTGTAAATCAAGAGGTTCTGTTGCG 1283 Query 164776 ------AATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | | | |||||||| | || ||||||||| | || |||| || || || || Sbjct 1282 GGCAACAGTGGTGTTCATGATACTGTTGTTAATCAGCTACTAGCTAAGATTGACGGAGTC 1223 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 ||| | |||||||||||| || | || ||||| || |||| |||| | |||||||| Sbjct 1222 GAACAACTTAATAATATTTTAGTTATCGGAATGACTAATCGACGTGATATGATTGATGAA 1163 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 || | | |||| |||||||| ||| || |||| ||||| |||||||| || |||| Sbjct 1162 GCGCTGATGAGACCCGGTCGATTGGAAGTGCAAATGGAAATTGGATTACCAAACGAAGAG 1103 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCT 165009 ||||| | |||||||||||| | ||| | | ||||| | | | | | | | | Sbjct 1102 GGACGTCATCAAATTTTAAATATACATACGAAAAGAATGAGAGAATTTAAGAAAATTAAT 1043 Query 165010 CCCGATGTAGATTTAAATAAAATAGCTGCCGA----AACTAAAAATTATAGTGGTGCTGA 165065 || ||||| ||| ||| ||| |||| | | ||| ||||||| ||||||||||| Sbjct 1042 CCTGATGTTGAT---AAT-AAAGAGCTTTCTACACTAACAAAAAATTTCAGTGGTGCTGA 987 Query 165066 ATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGCATTAAGTCGATGTGTTAAAGTAG 165124 |||||| || || ||| | || || || || || || | | ||| | |||||| || Sbjct 986 ATTAGAAGGTTTGGTACGTGCTGCACAGTCTACAGCCATGAATCGTTTAATTAAAGCAG 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594480162182400