Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq65168 120 2e-22 seq39338 120 2e-22 seq24145 118 6e-22 seq2596 118 6e-22 seq132343 116 2e-21 seq20896 116 2e-21 seq153275 109 3e-19 seq144361 109 3e-19 seq41945 109 3e-19 seq34791 109 3e-19 seq15008 109 3e-19 seq144445 104 1e-17 seq21262 98.7 5e-16 seq26624 89.7 3e-13 seq174648 87.8 9e-13 seq44004 86.0 3e-12 >seq65168 Length=4560 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1717 TAAAAAAACAAAT-GGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 1775 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 1776 CGCTCTAACCAACTGAGCTAATGGGCC 1802 >seq39338 Length=6174 Score = 120 bits (132), Expect = 2e-22 Identities = 88/101 (87%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAA-AAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||| || ||||||| ||| ||||| |||||||| |||||||||| |||||||||| Sbjct 2683 ATACAAATAATAAATAAAAAAAATTATGGCCCATGGGAGGATCGAACTCACGACCTTCGC 2742 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||||||||| Sbjct 2743 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 2783 >seq24145 Length=9762 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1547 AATAAAAAAT-ATTCTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCAC 1605 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||||||||||||||||||||| Sbjct 1606 GACGCTCTAACCAACTGAGCTAATGGGCCGT 1636 >seq2596 Length=10336 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 2234 AAAATGTAATTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGC 2175 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 2174 TCTAACCAACTGAGCTAATGGGCC 2151 >seq132343 Length=2953 Score = 116 bits (128), Expect = 2e-21 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2808 AAAAAT-AAACTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 2750 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 2749 CTCTAACCAACTGAGCTAATGGGCC 2725 >seq20896 Length=15472 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 11252 AAATTGGCTCATGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 11311 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 11312 CAACTGAGCTAATGGGCC 11329 >seq153275 Length=1510 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1076 TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1017 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1016 TGAGCTAATGGGCC 1003 >seq144361 Length=1165 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||| Sbjct 814 TGGCCCATGAGAGGATTGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 755 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 754 TGAGCTAATGGGCC 741 >seq41945 Length=6925 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2404 TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2345 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2344 TGAGCTAATGGGCC 2331 >seq34791 Length=3111 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1349 AACTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACC 1408 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 1409 AACTGAGCTAATGGGCC 1425 >seq15008 Length=13832 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5296 TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5355 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5356 TGAGCTAATGGGCC 5369 >seq144445 Length=2698 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2458 TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAT 2517 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2518 TGAGCTAATGGGCC 2531 >seq21262 Length=11074 Score = 98.7 bits (108), Expect = 5e-16 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11430 AATATAGAATTA--ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| || ||||| |||||||| || || |||||||| |||||||||| |||||||| Sbjct 4094 AATTTAAAATTAGAATAAAAAAGCAGAT-GGCCCATGGGAGGATCGAACTCGCGACCTTC 4036 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||||||||||||||||||| ||||||| Sbjct 4035 GCGTTATTAGCACGACGCTCTAACCAACT 4007 >seq26624 Length=5903 Score = 89.7 bits (98), Expect = 3e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 2672 AAAATAAAACTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGC 2613 Query 11506 TCTRACCA 11513 ||| |||| Sbjct 2612 TCTAACCA 2605 >seq174648 Length=5108 Score = 87.8 bits (96), Expect = 9e-13 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| || ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 3577 TAAAAAAT--AACTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 3634 Query 11503 CGCTCTRACCA 11513 |||||| |||| Sbjct 3635 CGCTCTAACCA 3645 >seq44004 Length=4969 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| || Sbjct 3225 TCGAACTCTCGACCTTCGTGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGACC 3283 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260895678633664