Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq77412 114 1e-20 seq47011 111 1e-19 seq105237 100 3e-16 seq53184 91.5 1e-13 >seq77412 Length=2780 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | |||||||| ||||| | ||| |||||| ||| ||| || ||| | Sbjct 135 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGG--ATAATGTACGACCATCTT 192 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||||| ||| |||||||||| | ||| |||||||| ||||| ||||||||||| | Sbjct 193 CCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTT 252 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||||| ||||| | | ||||| | | || || |||| ||||| || | Sbjct 253 GGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCT 312 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||||| || || || ||||| Sbjct 313 TACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq47011 Length=3271 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| || || | || ||||||||||| | || ||||| || || ||| || Sbjct 1478 CACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTC 1537 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| || | || ||||| | ||| |||||||| ||||| ||||||||||| | Sbjct 1538 CAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTG 1597 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| |||||||| ||| ||| || | | || || |||| || ||||| || Sbjct 1598 GATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTT 1657 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| ||||| ||||| |||||||| |||||| Sbjct 1658 TCCCGTAAGTGTTTTTACAAAGATTTGCATG 1688 >seq105237 Length=11214 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || || || || |||||||| | || ||||| || || || ||| || Sbjct 9092 CACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTC 9033 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | ||||| || |||| || | | ||| |||||||| |||||||||||||| || | Sbjct 9032 TAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 8973 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| || ||||| | | || || | | ||||| |||| |||||||| || Sbjct 8972 AATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTT 8913 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAA 95015 || || | ||||| |||||||| ||||| | |||| Sbjct 8912 GCCCGTCAATGTTTTTACAAAGATTTGCATTTTGACAA 8875 >seq53184 Length=5087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || ||||||||||| | ||| |||| | | | ||| || ||| | Sbjct 4670 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAAT--CCGACAATGTACGACCATCTT 4727 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | | ||||| || |||||||||| | ||| |||||||| ||||| |||||||| || | Sbjct 4728 CTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTT 4787 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || || || | | || || | | || || || | ||||| |||| Sbjct 4788 GAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTT 4847 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | ||| || || || || ||||| Sbjct 4848 TACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447244081415040