Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq42501 118 2e-22 seq2167 113 7e-21 >seq42501 Length=12576 Score = 118 bits (130), Expect = 2e-22 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || |||||||||||||| ||||| || ||||||||| Sbjct 3150 GCAAAGCGTCATCGCAAAGTACTCCGTGATAACATCCAAGGTATCACTAAACCAGCTATC 3209 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || || ||| | |||||||| | ||||| || | | Sbjct 3210 CGTCGTCTTGCTCGACGCGGTGGTGTGAAACGTATTTCTGGATTAATTTATGAGGAAACT 3269 Query 16553 CGTGATGT 16560 |||| ||| Sbjct 3270 CGTGGTGT 3277 Score = 84.2 bits (92), Expect = 3e-12 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 ||||| |||||||| |||||||| || || || | |||||| | |||||||||||||| Sbjct 3380 TATACTGAGCACGCGAAACGTAAAACAGTAACAGCAATGGATGTAGTCTATGCATTGAAG 3439 Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || ||||| |||| |||| ||||| || ||||| Sbjct 3440 CGACAAGGACGTACTCTTTACGGTTTCGGTGGTTAA 3475 >seq2167 Length=6465 Score = 113 bits (124), Expect = 7e-21 Identities = 100/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 ||||| | |||||| | |||||||| || ||||||||||| ||||| ||| | ||| Sbjct 3976 GTTATTCGTGATGCAGTAACATATACCGAACATGCTAAACGTAAAACTGTTACCGCTATG 3917 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | || |||||||||||||||||||| |||| | |||||||||||| |||||| | Sbjct 3916 GATGTTGTATATGCATTGAAACGTCAAGGTCGTACATTATATGGTTTTGGAGGTTAAT-T 3858 Query 16703 TCTA 16706 |||| Sbjct 3857 TCTA 3854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78904348936752