Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq132843 96.9 7e-16 seq121920 96.9 7e-16 >seq132843 Length=1497 Score = 96.9 bits (106), Expect = 7e-16 Identities = 154/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTT 4533 ||||| |||||||||||||| | |||||||| ||||| || ||| ||||||| | Sbjct 1041 AAAAAAAATTATGTTATTCATTTAAAAAATTTAAAACAGTGCTTATCAGAAGGTTTAATA 1100 Query 4534 CTTAAGAAAATACA-CCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATAT 4592 ||| |||||||| | | |||| |||||| | ||| | ||||| ||| ||||||| Sbjct 1101 CTTTCAAAAATACATCGGATTCTT-AAATTTAATCAAAAACCTTGGCTTAAACCATATAT 1159 Query 4593 CGATAAAAATACCGCAT----GC-CGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT 4647 || |||| || || || |||| |||||| ||| || || || ||||| Sbjct 1160 TGACCTTAATA-CGAATCTTCGCTCGAA----AGCTAAAAATACTTTTGATAAGGACTTT 1214 Query 4648 TATAAATTAATGAATAATGCGGTTTTTGGAAAGAC 4682 | |||||| ||||||||| ||||||||||| || Sbjct 1215 TTTAAATTGATGAATAATAGTGTTTTTGGAAAAAC 1249 >seq121920 Length=4961 Score = 96.9 bits (106), Expect = 7e-16 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 4447 CAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTG 4506 |||||||| | | | ||| | ||||| ||||||||| ||||| ||||||| ||| Sbjct 4184 CAAAAACTACTGGCTAATCTCAATGATAAGTTTAATTATGTAATTCATTATAAAAGTTTA 4243 Query 4507 AAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAG 4566 ||||| ||| | | ||||||| || | || ||||| || ||| | |||| | Sbjct 4244 AAACAGTGTCTGCAAGAAGGTTTAATTTTGAAAAAAATTCATAGAGTTCTCGAATTCGCC 4303 Query 4567 CAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAG 4626 ||| | ||||| ||| |||| || ||| |||||| || ||| |||||| Sbjct 4304 CAAAAACCTTGGCTAAAACCATACATTGATCTGAATACCAGATTGCGATCTGCGGCTAAG 4363 Query 4627 AATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATG 4686 || ||||||||| | |||||||| ||||||||||| || ||||| || || || Sbjct 4364 AACCCATTCGAAAAAGATTTTTATAAGCTAATGAATAATAGTGTGTTTGGTAAAACTATT 4423 Query 4687 GAGAATGT 4694 || |||| Sbjct 4424 GAAGATGT 4431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97756993826656