Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq115302 143 3e-29 >seq115302 Length=2783 Score = 143 bits (158), Expect = 3e-29 Identities = 362/548 (66%), Gaps = 16/548 (3%) Strand=Plus/Plus Query 21457 TAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAA 21516 ||| ||||||||||| | ||| ||||||||||| || || ||||| || || ||||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 21517 TTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGC 21576 ||| || |||||||| ||||| ||||| | || | ||||| ||||||||||| || || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 21577 AAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT-CGTTCACCGT 21635 || || ||||||||| || || || || || ||||||| |||| |||||||| Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAA-TAATACGTTCACCAA 1924 Query 21636 ATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAAT 21695 | | | ||| | ||||||| | ||||| | || || | ||| | ||| Sbjct 1925 AATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATG 1984 Query 21696 CAATTGTATCAATAGCTTT---TAAAA---GATGAtttttttCATCTACATCGGTTATGN 21749 | || |||| || || ||||| | | | |||| ||| |||| ||| Sbjct 1985 GTAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATC----TCGGATAT-- 2038 Query 21750 NNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATC 21809 ||| ||||| || ||||| | |||||| || || || ||||| | Sbjct 2039 ACGTATCAATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACC 2098 Query 21810 CGTAAAAACATCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTT 21868 |||| ||||| | ||| || | |||||| || | | ||| |||| | | || ||| Sbjct 2099 CGTAGAAACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAA-CGTTCAACTAAATTT 2157 Query 21869 TCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGT 21928 || ||||| || |||||| || || |||||||| | || | ||||| | ||| Sbjct 2158 TCGTTTACAATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGT 2217 Query 21929 TCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTT 21988 || | ||| | | |||||| | |||||||||| || |||||||||| | Sbjct 2218 TCAGACGGTTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCT 2277 Query 21989 GTCCAAAA 21996 |||||||| Sbjct 2278 GTCCAAAA 2285 Score = 138 bits (152), Expect = 1e-27 Identities = 192/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 ||||| || || || ||||||| || || || || || || ||||||| || Sbjct 1390 TTTATCTAGAAGTCGGCATCTAGTGTAAACACGTTGTCCAAACGGTTCGACATAACACCA 1449 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 ||| ||||| || ||| |||||||||| |||||||| || || ||||||||||| Sbjct 1450 CATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAATGATATG 1509 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 ||||||| || | |||||||||| | || | ||||| | | |||| ||| Sbjct 1510 AATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAATTCACCG 1569 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | ||| | ||| || ||||| || ||||||||| |||| ||||||||||||||||| | | Sbjct 1570 AGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAATTCATACCAAGC 1629 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAA 21390 | ||||| || | || | ||| ||||| Sbjct 1630 ATGTTTACTGGCAAGGCATCTGTTAAAAA 1658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530658386111360