Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq146712 426 2e-114 seq115302 304 2e-77 >seq146712 Length=6971 Score = 426 bits (472), Expect = 2e-114 Identities = 1127/1717 (66%), Gaps = 63/1717 (4%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || ||||| |||||||| |||||||| ||||||| || | |||| || |||||| Sbjct 2411 GCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAA 2470 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || ||| ||||| || ||| | || || |||| || ||||| | ||||| ||| Sbjct 2471 TGAATAGAAGTTAGCTTTCCGTAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTT 2530 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || || || | || || ||||| || || | ||| || || | |||| Sbjct 2531 TGATCTATAAAAGCACCACGATCCGCGGCCATCTTAATTAGCGTTTTAACTGACACTTCC 2590 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 62252 || | |||||||||| | ||| |||| || | | | |||| ||||| || Sbjct 2591 CATACTGTTTTATAAAGACCACGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTGAA 2650 Query 62253 CCA-------------------------------CCATCTGCC---ATAATCCTATTCTT 62278 ||| |||| | || |||| | ||| || Sbjct 2651 CCATTTGCCGCAATANTCAATATTTTGAATTAAACCATTTACCGCAATAACGCGATTTTT 2710 Query 62279 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62338 || ||||||| ||| | | | |||||||| | | | | ||| | || ||||| Sbjct 2711 TATGTCATCATCCCACAGATCTAATTCGGTTAAGTCCTTTATCAAATGGTGGTTTACTAC 2770 Query 62339 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62398 ||||||||| ||||| | ||| | | || || | || ||||| ||||| | || Sbjct 2771 TTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGTATAGGGTTCGAAAGA 2830 Query 62399 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62458 |||||||||||||||||||| || || || ||||||||||| || || | | | | Sbjct 2831 TTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGA 2890 Query 62459 ATTTCTAAGACCGTATG-TTCT-GATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGAT 62514 |||||||| || ||| ||| |||||| | || | | ||| ||||| ||| | || Sbjct 2891 ATTTCTAACTCC--ATGCTTCGCGATTTTTGCCTTCAACGCGGT--CCAATCCCATAAAT 2946 Query 62515 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 62573 | | || || | || || ||||| | | || |||| Sbjct 2947 CTGTTGGAGTTTTATTCCACATATCATACTGCAAGATGCCTTTACTTACTGGACT-TCCT 3005 Query 62574 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62633 ||||||| ||||| | ||| || ||||||||||| ||||| || |||||||||||| Sbjct 3006 TCATATGTTTCGTAGGTGCCTAATTTTTCAGCTAGTTCGCAACTAGCTTCTAATGCACCG 3065 Query 62634 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 62693 || || || || ||||| || | || |||| |||||| || || ||| ||| | Sbjct 3066 TAGTATATTGTCTCGAAAATTTGCTGGTTTAATAATTGTGCCTCTTCACTTTCATATGCA 3125 Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753 ||| | | || || || || || | ||||| |||||||| || || |||| |||| Sbjct 3126 TAACGCATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGT 3185 Query 62754 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62813 ||| |||| || || ||||| || || ||||| ||||||| ||| || |||||||| Sbjct 3186 CTCATATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTT 3245 Query 62814 AGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62870 | |||| | |||||| || || || |||| ||| |||||| || Sbjct 3246 AAATTTTTTGTCACAATT---TTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTT 3302 Query 62871 TC--TA----TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 62924 || || |||||||||| || | ||| | || || | ||||||||||||||| ||| Sbjct 3303 TCATTAACATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCA 3362 Query 62925 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 62984 | || | ||| || || || || || | ||| ||| || || || || | | Sbjct 3363 TCTTTTGACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATA 3422 Query 62985 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63044 ||||||||||| ||| ||||| ||||| ||||| || || | ||| |||||| Sbjct 3423 TTTTGTTGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTT 3482 Query 63045 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 63104 |||| ||| ||| ||||| || | ||| | | | || || | | | | | Sbjct 3483 TCAACTTGACTTTCAATAATAGCATACCATAGAGATTGGGCTTTCACTTTGCGTAGAAAA 3542 Query 63105 CTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63164 | | ||| ||||| ||| ||| | | ||| || || ||||||||| || || Sbjct 3543 CGGCCTTCGCTTTCATATTTCTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGA 3602 Query 63165 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTT 63223 | ||||||||||| | |||||||| || ||||| ||| | | | |||| || || || Sbjct 3603 AGACCAGGACATTCGTGAGGACACATTAAAGACCAATCTTCAT-TTGCTTCAACGCGCTT 3661 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 |||||| | || || ||||| || || ||| | ||||| || ||| |||||| || Sbjct 3662 CATAAATAAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTT 3721 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 |||||||| || || | ||| || || | | ||||||| |||||| ||||| | || Sbjct 3722 ACCTGTATTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATA 3781 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 ||||| | | || || |||||||| || || ||||| | ||| | ||| || ||||| Sbjct 3782 AATGGCAAATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATT 3841 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 || ||||| |||| || | || || || || |||||||| ||||| | ||||| Sbjct 3842 GTACACTCTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGA 3901 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 ||| | || |||||| | || || ||||| || ||||| ||| || ||||| Sbjct 3902 TCCCTTTGCTCGAATACAATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAA 3961 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT-CGATCATGTTAAGTA 63582 ||| ||| |||| || || ||||| ||||| || || ||||| | ||| |||||| | Sbjct 3962 TGCACATTGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAA-CA 4020 Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 ||| || || | || | ||| ||||| || ||| | || || || || | Sbjct 4021 AAAAGCATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCAT 4080 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 63679 | || || || |||| || | || ||||||||| || Sbjct 4081 GAGTGAAATATCTTTCCGATAATAAATTGTACGTTTC 4117 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763 |||||| || | ||||| ||||| | ||| |||||||||||||| | || || | ||| Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAAT-TTTTCGTT 4569 Query 63764 T-ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 | ||||||||||| || ||| |||||| |||||||| |||||||| ||||| ||| | Sbjct 4570 TAATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAAT 4629 Query 63823 CTCGTTCGTAAATAATAACCGAGTT 63847 | || || ||||| ||| | || || Sbjct 4630 CACGATCATAAATTATAGCTGAATT 4654 >seq115302 Length=2783 Score = 304 bits (336), Expect = 2e-77 Identities = 402/554 (73%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 33285 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 33344 ||||||||||||||| | ||| || ||||| ||||| | || |||||||| ||||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 33345 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33404 |||||| ||||| || | || ||||| |||||||| ||||| | |||||||||||| || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 33405 GAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA 33464 ||| ||| |||||| |||||||| || || || || ||||||| | || ||| | Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 33465 AC-CGGCGCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 | || || | | | || | |||| | | | ||||| || || |||||||||||||| || Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 33522 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33581 | ||||| | |||||| || | | ||| || || |||| | ||| ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 33582 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || | |||||| ||||| || ||||||| ||||| ||||| || ||||| |||||||| Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 33642 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCAC 33701 ||| | || ||||| || || |||||| | || ||||| | |||||||| || || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 33702 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 33761 || || ||| ||||| ||||| || | ||| || ||||| | ||| || Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 33762 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 | ||||| || ||||||| || ||||| |||| || |||||||| |||||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Query 33822 TGATGCCTCTGCCT 33835 |||||| || |||| Sbjct 2286 TGATGCTTCCGCCT 2299 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 |||||||| || ||| || ||||| |||| ||||||||| ||||| ||||| || Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 ||||||||||| ||||||||| | || ||||| | || |||||||||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 ||||||||| | || | ||| || || || || |||||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAAT 33230 ||||| || | | || ||||| | || | || | ||| ||||||||||| Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621492119930240