Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq98090 147 2e-30 seq77412 113 4e-20 seq105237 102 8e-17 seq53184 89.7 5e-13 >seq98090 Length=13235 Score = 147 bits (162), Expect = 2e-30 Identities = 222/312 (71%), Gaps = 4/312 (1%) Strand=Plus/Plus Query 71666 AATCA--AACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTA 71723 ||||| |||| |||| || |||||||||| ||||| ||| | |||||||| | Sbjct 10847 AATCATTAACGTATGACGATTTATGGAATGCAGCTCAATTACAATTGGTTAATGAGGGGA 10906 Query 71724 AAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTC 71783 |||| || |||| | || ||||| ||||| ||||| || ||||| |||||| ||| || Sbjct 10907 AAATGCATGGATTTATGCGAATGTATTGGGCGAAAAAAATCCTCGAATGGACTGAAAGTC 10966 Query 71784 CCGAGCAGGCGCTCGAGTATT-CTATTTATCTAAACGATAGATACAGTCTCGACGGTCGC 71842 | || | || ||| | ||| |||| ||| |||| ||| |||| ||| | ||||| | Sbjct 10967 CAGAAGAAGCTCTCC-GAATTGCTATCTATTTAAATGATCGATATAGTTTAGACGGAAGG 11025 Query 71843 GATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTT 71902 |||||||| || ||||| || || |||||| ||| | || | |||||| | | | Sbjct 11026 GATCCTAATGGCTATGTGGGCTGTATGTGGTCAATTGGTGGAATCCACGATCAAGGATGG 11085 Query 71903 TTAGAACGTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAG 71962 ||||| | | ||||||||||| |||| |||||| || ||| || |||| ||| Sbjct 11086 GCTGAACGGCCCATTTTTGGTAAAATACGCTTCATGAATTATAGTGGATGTAAACGAAAG 11145 Query 71963 TTCAATGTGAAA 71974 || |||| ||| Sbjct 11146 TTTGATGTAAAA 11157 >seq77412 Length=2780 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || |||||||| ||||| || || | ||||| | ||| ||||| || Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||| || ||||||||||| || || || |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | ||| |||||| | ||||||| | | | | ||| || ||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||||||||| | ||| |||| || Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGTTCT 132 >seq105237 Length=11214 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 |||||||||| | |||||||||||||| || || || | |||||| | || | ||| | Sbjct 8879 CAAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACC 8938 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | || || || || | |||||| || ||| || |||||||| || || || || Sbjct 8939 ATCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGA 8998 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| | ||||||| | ||||||||| | ||||||| |||| | || || Sbjct 8999 TCAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTA 9058 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || || || | ||| |||| || Sbjct 9059 CAATATCCAAAAGGAGTCGACATTACATTTGGTGCT 9094 >seq53184 Length=5087 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || |||||||| ||| | ||||| | || | ||| | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | |||||| || || || |||||||| || || || || ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| || ||||||||| || ||||||| ||| | ||||| || Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 26949 ATTCAAAAAGAATCTAC 26965 ||||||||||| ||||| Sbjct 4470 ATTCAAAAAGAGTCTAC 4454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477544340366080