Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq146712 183 8e-41 >seq146712 Length=6971 Score = 183 bits (202), Expect = 8e-41 Identities = 474/718 (66%), Gaps = 12/718 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || ||| | ||||| |||| |||||||| | | |||||| | || || Sbjct 4087 TTCACTCATGCCTCACCAACGATGTTTGCGGCTGGAACACCTCGACCACAGTTATCGTCA 4028 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||| | ||| |||| ||| ||| ||||| ||||| | ||| ||| | || | Sbjct 4027 TGCTTTTTGTTAACAATGTCGGAAGATAGTATCGATGGTATTTATGATACATTGAAACAA 3968 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| | ||||| || |||||| || || || | | || | |||| ||| Sbjct 3967 TGTGCATTAATTTCAAAATCTGCAGGAGGTATAGGCCTTAATGTTCATTGTATTCGAGCA 3908 Query 363727 CAG--AACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | || || ||| || ||| || || |||||||| || || || | Sbjct 3907 AAGGGATCA--TATATTGCGGGTACAAATGGTATTTCTAATGGGCTTGTACCTTTGTTAA 3850 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | |||| | |||||||| ||||||| || || ||||| || || || || | Sbjct 3849 GAGTGTACAATAATACTGCTCGGTACGTTGATCAAGGTGGTAACAAACGTCCCGGCGCAT 3790 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || ||||| || ||| |||| ||||||||||| |||||||| | ||||| Sbjct 3789 TTGCCATTTATCTAGAACCTTGGCATGGTGATATTTTTGAATTTCTTGATTTAAAGAAAA 3730 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 | || || ||||||||| | | || || ||| |||| |||||||| ||| | | ||| Sbjct 3729 ATACAGGTAAAGAGGAAGTTAGGGCCCGAGATATGTTTTATGCACTATGGATACCCGACT 3670 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 |||||||||||||| || ||| | | ||||||| | | || || |||||||||| Sbjct 3669 TATTTATGAAGCGCGTTGAAGCAAATGAAGATTGGTCTTTAATGTGTCCTCACGAATGTC 3610 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | |||||| |||| ||||| || || | || ||||| || || |||||| Sbjct 3609 CTGGTCTTCACGATTGTTGGGGAGATGAATTTGAAAAACTATATGAGAAATATGAA---- 3554 Query 364085 AGGGAAAGGC---TCGTAAG-ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 || ||| | | | || | | | | || || ||||||| ||| || || || Sbjct 3553 AGCGAAGGCCGTTTTCTACGCAAAGTGAAAGCCCAATCTCTATGGTATGCTATTATTGAA 3494 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 || |||| || ||| || |||||| |||| |||||| | || || || || ||| Sbjct 3493 AGTCAAGTTGAAACTGGAGTTCCGTATATGCTGTATAAAGATGCTTGTAATCGAAAATCC 3434 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 || || || | | ||||| ||| | ||| | |||||||| ||| | |||| Sbjct 3433 AATCAACAAAATATCGGTACCATTAAATGTTCCAATTTGTGTACCGAAATTGTAGAAT 3376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300233117327648