Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq90862 224 7e-54 seq53184 134 9e-27 seq105237 131 1e-25 seq13668 127 1e-24 seq77412 120 2e-22 seq47011 113 3e-20 seq16228 104 2e-17 seq71174 100 2e-16 seq7590 96.9 2e-15 seq28507 95.1 8e-15 seq58624 91.5 1e-13 seq57207 86.0 4e-12 >seq90862 Length=4261 Score = 224 bits (248), Expect = 7e-54 Identities = 251/334 (75%), Gaps = 1/334 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| ||| | || |||||||||||||| | || |||||||| || ||||||||||| Sbjct 979 ATGGGTACCGTAAATGTAAATCGTAATGTTACCGATGCGTTCTATCGTTACAAAATGCCT 1038 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||| || || || |||||||| || ||||| || ||||| || ||||| || ||| Sbjct 1039 CGCATTAATGCTAAAGTGGAGGGTAAAGGTAACGGCATAAAAACTGTTATTGTTAATATG 1098 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || ||||| ||| | ||||| || || || || || || |||||||| || ||| Sbjct 1099 GCAGAGGTTGCTAAAGCGATTGGACGTCCCGCGACATATCCAACTAAATATTTTGGTTGC 1158 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 ||| | ||||| || || ||||| ||| | ||||| || || || || || || || ||| Sbjct 1159 GAATTGGGCGCCCAAACACAGTTCGATTATAAAAATGAACGTTTTATTGTCAATGGGTCG 1218 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 ||| | | || || | || || ||| | || || |||||||| || ||||| ||||| Sbjct 1219 CATGATGCAGCAAAATTACAAGATTTATTGGATGGATTTATTCGAAAATTTGTATTGTGT 1278 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTG 6495 | ||||| ||||| || ||||| ||| |||||| Sbjct 1279 CCAGAATGTGATAATCCCGAGACAGAG-TTATTG 1311 >seq53184 Length=5087 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| ||| |||||||| || |||||||| | Sbjct 4650 TACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCG 4709 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || ||||| |||| ||||||||||| | | Sbjct 4710 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTG 4769 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || |||||| || ||||||| | ||||| ||||| Sbjct 4770 GAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAA 4829 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||||| || |||||||| || || || || ||||| || ||||| Sbjct 4830 CCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 107 bits (118), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| || || |||||||| || ||| |||||||||||||| |||| || ||||| Sbjct 4435 ACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAG----AAAGCGTTC 4490 Query 38162 G----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTT 38217 | || |||| ||||| ||||| || |||| |||||||| || | || | |||| Sbjct 4491 GCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTT 4550 Query 38218 CTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATG 38277 |||| || ||||| || ||||||| | ||||| |||||| ||||||| Sbjct 4551 CTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATG 4610 Query 38278 TAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || |||||||| || || || || ||||| || ||||| Sbjct 4611 TGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 >seq105237 Length=11214 Score = 131 bits (144), Expect = 1e-25 Identities = 175/242 (72%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||| | || ||||||||| ||||||||||||| Sbjct 9111 TACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAG 9052 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || ||||||||||| || ||||| || || ||||||||||| | | Sbjct 9051 ACAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTG 8992 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| ||| |||||| || ||||| | | |||||| ||| | Sbjct 8991 GAATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGA 8932 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGC 38328 | || | || || || || |||||||| ||||| || || || ||||| ||| |||||| Sbjct 8931 CCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCAT-TTTGACAAGC 8873 Query 38329 TC 38330 || Sbjct 8872 TC 8871 >seq13668 Length=9549 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||| ||||||||||||| || |||||||| Sbjct 7978 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTATATAGTAGATAGGGAGAGTGGAAATCTCGT 7919 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||| |||||| |||||||||||||||| Sbjct 7918 TAATCCATTCAGGCGCGTTACTAATTAGATGACGA 7884 >seq77412 Length=2780 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||||| || || |||||||| |||||||| | Sbjct 115 TACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGG 174 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || ||| | || || |||||||| |||||||| |||| ||||||||||| | | Sbjct 175 ATAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTG 234 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| |||||| || ||||| | | || ||| ||| | Sbjct 235 GAATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTA 294 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || ||||| || |||||||| ||||| || ||||| Sbjct 295 CTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||||| ||| ||||||||||| |||||||| | Sbjct 343 TACCACCACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGG 402 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || ||| | || |||||||| || || || || || || ||||||||||| | | Sbjct 403 ATAATGTACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTG 462 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258 | | ||||| ||||| ||||| || ||||||| | |||||| Sbjct 463 GAATTCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTATCT 512 >seq47011 Length=3271 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| |||||||| ||| |||||||| ||||||||||| ||||| ||| | Sbjct 1472 ACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCC 1531 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || |||||||| || || || |||| ||||||||||| | || | |||||||| Sbjct 1532 ATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTT 1591 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||||| ||| ||||| | || |||||| ||||| || | || || Sbjct 1592 GTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTAT 1651 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| | ||||| || || || |||||| Sbjct 1652 GGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCATG 1688 >seq16228 Length=14440 Score = 104 bits (114), Expect = 2e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 9567 CTCTCTATTCAGAGTT-TTTTCAACTTTCCCTCACGGTACTTATTCGCTATCGGTCTCGT 9509 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| |||| Sbjct 9508 GGTCATATTTAGTCTTA 9492 >seq71174 Length=3924 Score = 100 bits (110), Expect = 2e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| | Sbjct 53 CTCTATTCAAAGTTCTTTTAAACTTTCCCTCACGGTACTTGTTCGCTATCAGTCTCGTAG 112 Query 20009 TAATATTTAGCCTTA 20023 | ||||||| |||| Sbjct 113 TCATATTTACTCTTA 127 >seq7590 Length=5798 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/88 (84%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 || |||||||| ||||||||||| |||| |||||||| || |||||||||||||| Sbjct 559 TTACCTTGGCTATGGTTTCGCTAAATAGAAGATAGGGACAGTGGAAATCTCGTTAATCCA 618 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||| |||| || Sbjct 619 TTCATGCGCGTCACTAATTTAATGAAGA 646 >seq28507 Length=8335 Score = 95.1 bits (104), Expect = 8e-15 Identities = 72/85 (85%), Gaps = 5/85 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||| ||||||||||||||||||| |||||||||||||||| | | |||||||| Sbjct 5521 AAGCCTGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGACGCAATCGGAATCTCGT 5462 Query 25957 TAATCCTTTCATGCGCGTCACTAAT 25981 |||||| ||||| ||||||||||| Sbjct 5461 TAATCCATTCATCTGCGTCACTAAT 5437 >seq58624 Length=2300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 19959 AGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAG 20018 |||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||| Sbjct 928 AGTTCTTTTCAACTTTCCCTCAAAATACTTGTTCGCTATCTGTCTCGTGGTCATATTTAG 987 Query 20019 CCTTA 20023 ||||| Sbjct 988 CCTTA 992 >seq57207 Length=8082 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 5/67 (7%) Strand=Plus/Minus Query 25930 TAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||||||||||||| || |||||||||||||| |||||| |||||||||||||| Sbjct 2613 TAGATAGTAGATAGGGTCGGTGGAAATCTCGTTAATCCATTCATGTGCGTCACTAATTAG 2554 Query 25985 ATGACGA 25991 ||||||| Sbjct 2553 ATGACGA 2547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334184389571984