Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq146712 435 4e-117 seq115302 304 2e-77 >seq146712 Length=6971 Score = 435 bits (482), Expect = 4e-117 Identities = 1129/1717 (66%), Gaps = 63/1717 (4%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || || ||||| |||||||| |||||||| ||||||| || | |||| || |||||| Sbjct 2411 GCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAA 2470 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| ||||| || ||| | || || |||| || ||||| | ||||| ||| Sbjct 2471 TGAATAGAAGTTAGCTTTCCGTAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTT 2530 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || || || | || || ||||| || || | ||| || || | |||| Sbjct 2531 TGATCTATAAAAGCACCACGATCCGCGGCCATCTTAATTAGCGTTTTAACTGACACTTCC 2590 Query 62051 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 62107 || | |||||||||| | ||| |||| || | | | |||| ||||| || Sbjct 2591 CATACTGTTTTATAAAGACCACGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTGAA 2650 Query 62108 CCA-------------------------------CCATCTGCC---ATAATCCTATTCTT 62133 ||| |||| | || |||| | ||| || Sbjct 2651 CCATTTGCCGCAATANTCAATATTTTGAATTAAACCATTTACCGCAATAACGCGATTTTT 2710 Query 62134 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62193 || ||||||| ||| | | | |||||||| | | | | ||| | || ||||| Sbjct 2711 TATGTCATCATCCCACAGATCTAATTCGGTTAAGTCCTTTATCAAATGGTGGTTTACTAC 2770 Query 62194 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 62253 ||||||||| ||||| | ||| | | || || | || ||||| ||||| | ||| Sbjct 2771 TTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGTATAGGGTTCGAAAGA 2830 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 |||||||||||||||||||| || || || ||||||||||| || || | | | | Sbjct 2831 TTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGA 2890 Query 62314 ATTTCTAAGACCGTATG-TTCT-GATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGAT 62369 |||||||| || ||| ||| |||||| | || | | ||| ||||| ||| | || Sbjct 2891 ATTTCTAACTCC--ATGCTTCGCGATTTTTGCCTTCAACGCGGT--CCAATCCCATAAAT 2946 Query 62370 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 62428 | | || || | || || ||||| | | || |||| Sbjct 2947 CTGTTGGAGTTTTATTCCACATATCATACTGCAAGATGCCTTTACTTACTGGACT-TCCT 3005 Query 62429 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62488 ||||||| ||||| | ||| || ||||||||||| ||||| || |||||||||||| Sbjct 3006 TCATATGTTTCGTAGGTGCCTAATTTTTCAGCTAGTTCGCAACTAGCTTCTAATGCACCG 3065 Query 62489 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGA 62548 || || || || ||||| || | || |||| ||| || || || ||| ||| | Sbjct 3066 TAGTATATTGTCTCGAAAATTTGCTGGTTTAATAATTGTGCCTCTTCACTTTCATATGCA 3125 Query 62549 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62608 ||| | | || || || || || | ||||| |||||||| || || |||| |||| Sbjct 3126 TAACGCATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGT 3185 Query 62609 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62668 ||| |||| || || ||||| || || ||||| ||||||| ||| || |||||||| Sbjct 3186 CTCATATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTT 3245 Query 62669 AGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62725 | |||| | |||||| || || || |||| ||| |||||| || Sbjct 3246 AAATTTTTTGTCACAATT---TTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTT 3302 Query 62726 TC--TA----TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 62779 || || |||||||||| || | || | || || | ||||||||||||||| ||| Sbjct 3303 TCATTAACATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCA 3362 Query 62780 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 62839 | || | ||| || || || || || | ||| ||| || ||||| || | | Sbjct 3363 TCTTTTGACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATA 3422 Query 62840 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 62899 ||||||||||| ||| ||||| ||||| ||||| || || | ||| |||||| Sbjct 3423 TTTTGTTGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTT 3482 Query 62900 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 62959 |||| ||| ||| ||||| || | ||| | | | || || | | | | | Sbjct 3483 TCAACTTGACTTTCAATAATAGCATACCATAGAGATTGGGCTTTCACTTTGCGTAGAAAA 3542 Query 62960 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019 | ||| ||||| ||| ||| | | ||| || || ||||||||| || || Sbjct 3543 CGGCCTTCGCTTTCATATTTCTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGA 3602 Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTT 63078 || ||||||||||| | |||||||| || ||||| ||| | | | |||| || || || Sbjct 3603 AGACCAGGACATTCGTGAGGACACATTAAAGACCAATCTTCAT-TTGCTTCAACGCGCTT 3661 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 |||||| | || || ||||| || || ||| | ||||| || ||| |||||| || Sbjct 3662 CATAAATAAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTT 3721 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 |||||||| || || | ||| || || | | ||||||| |||||| ||||| | || Sbjct 3722 ACCTGTATTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATA 3781 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | || || |||||||| || || ||||| | ||| | ||| || ||||| Sbjct 3782 AATGGCAAATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATT 3841 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 || ||||| |||| || | || ||||| || ||||||| || || | ||||| Sbjct 3842 GTACACTCTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGA 3901 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| | || |||||| | || || ||||| || ||||| ||| || ||||| Sbjct 3902 TCCCTTTGCTCGAATACAATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAA 3961 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTA 63437 ||| ||| |||| || |||||||| || || || |||||||| ||| || |||||| | Sbjct 3962 TGCACATTGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAA-CA 4020 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 ||| || || | || | ||| ||||| || ||| | || || || || | Sbjct 4021 AAAAGCATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCAT 4080 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 63534 |||| || || |||| || | || ||||||||| || Sbjct 4081 GAGTGAAATATCTTTCCGATAATAAATTGTACGTTTC 4117 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 |||||| || | ||||| ||||| | ||| |||||||||||||| | || || | ||| Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAAT-TTTTCGTT 4569 Query 63619 T-ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677 | ||||||||||| || ||| |||||| |||||||| |||||||| ||||| ||| | Sbjct 4570 TAATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAAT 4629 Query 63678 CTCGTTCGTAAATAATAACCGAGTT 63702 | || || ||||| ||| | || || Sbjct 4630 CACGATCATAAATTATAGCTGAATT 4654 >seq115302 Length=2783 Score = 304 bits (336), Expect = 2e-77 Identities = 402/554 (73%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 32642 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 32701 ||||||||||||||| | ||| || ||||| ||||||| || |||||||| |||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 32761 |||||| ||||| || | || ||||| |||||||| ||||| | |||||||||||| || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 32762 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 || ||| ||||||||||||||| || || || || ||||||| | || ||| | Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 32822 AC-CGGCGCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | || || | | | || | |||| | | | ||||| || || |||||||||||||| || Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 | || || | ||||| || | | ||| || || |||| | ||| ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 ||| | |||||| ||||| || ||||||| ||||| ||||| |||||||| |||||||| Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 32999 GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33058 || | || ||||| || || |||||| | || ||||| |||||||||| || || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 33059 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 33118 || || ||| ||||| ||||| || | ||| || ||||| | ||| || Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 33119 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 | ||||| || ||||||| || ||||| |||| || |||||||| |||||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Query 33179 TGATGCCTCTGCCT 33192 |||||| || |||| Sbjct 2286 TGATGCTTCCGCCT 2299 Score = 136 bits (150), Expect = 5e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 |||||||| || ||| || ||||| |||| ||||||||| ||||| ||||| || Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 || |||||||| ||||||||| | ||||||||| | || |||||||||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 ||||||||| | || | ||| || ||||| || |||||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT 32587 ||||| || | | || ||||| | || | || | ||| ||||||||||| Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632151962374400