Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq77412 149 5e-31 seq53184 145 7e-30 seq47011 143 2e-29 seq105237 138 1e-27 >seq77412 Length=2780 Score = 149 bits (164), Expect = 5e-31 Identities = 164/216 (76%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || || |||||||| | ||||| | ||||| || | || Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||||||| || ||||||||||| |||||||| || Sbjct 283 GACACAATTGAAAATGTCA---AAGCAAAAATCCAA-GACAAAGAAGGAATTCCACCAGA 228 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || |||||||| |||||||| ||||||| ||| || | |||||| Sbjct 227 TCAACAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTA 168 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| |||||||||||||| || || ||||| || || Sbjct 167 CAACATTCAAAAAGAATCTACACTTCATTTGGTTCT 132 Score = 114 bits (126), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||| ||||| |||||||| || ||||| || ||||||| || ||||| Sbjct 487 AAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACAACGTCTTATTTTCGCTGGCAAG 428 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||| ||| || | ||||||||| |||||||| |||||||| || ||| Sbjct 427 CAATTAGAAGATGGTCGTACATTATCCGATTACAACATTCAAAAGGAATCCACACTTCAT 368 Query 25203 TTAGTGCT 25210 || || || Sbjct 367 TTGGTACT 360 >seq53184 Length=5087 Score = 145 bits (160), Expect = 7e-30 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| || |||||| | |||||| | || || || ||||| Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| || || |||||||| |||||||| ||| Sbjct 4590 GATACCATTGAG--AATGTCAAAGCCAAAATCCAA-GATAAAGAAGGAATTCCACCAGAC 4534 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| ||||||||||| ||||||||| || || | || ||| Sbjct 4533 CAACAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTAC 4474 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || || |||||||| Sbjct 4473 AATATTCAAAAAGAGTCTACACTTCATTTAGT 4442 Score = 145 bits (160), Expect = 7e-30 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||||| || |||||| | |||||| | || || || |||| Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| || |||||||| |||||||| || Sbjct 4818 GATACCATTGAG--AATGTAAAAGCCAAAATTCAA-GATAAAGAAGGAATTCCACCAGAT 4762 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||| || |||||||||||||||| ||| || || |||||| Sbjct 4761 CAACAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTAC 4702 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| |||||||| || || || || || Sbjct 4701 AACATCCAAAAGGAATCCACACTTCACTTGGTACT 4667 >seq47011 Length=3271 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || |||| || | || || ||| | || Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| | ||| |||||| |||||||||||||||||||| || ||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || |||||||| ||||||| || || || ||||||||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| || ||||||||||| Sbjct 1507 ATCCAAAAGGAATCCACACTTCATTTAGTGCT 1476 >seq105237 Length=11214 Score = 138 bits (152), Expect = 1e-27 Identities = 162/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || ||||| || || ||||||| | || || || | || Sbjct 8882 AATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCATC 8941 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| |||| |||| ||| || |||||||| |||||||| | Sbjct 8942 AGATACAATTGAAAATGTCA---AAGCTAAAATTCAG-GATAAAGAAGGTATTCCACCAG 8997 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | |||||||| ||||||||||||||||||| | || || |||| Sbjct 8998 ATCAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATT 9057 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| ||||| || || || ||||||| ||||| Sbjct 9058 ACAATATCCAAAAGGAGTCGACATTACATTTGGTGCT 9094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432341136646160