Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq115302 304 1e-77 seq9058 140 4e-28 seq90021 125 8e-24 seq15008 125 8e-24 seq178002 123 3e-23 seq79406 122 1e-22 seq56087 113 5e-20 seq27850 113 5e-20 seq12586 113 5e-20 seq18736 104 3e-17 >seq115302 Length=2783 Score = 304 bits (336), Expect = 1e-77 Identities = 392/541 (72%), Gaps = 0/541 (0%) Strand=Plus/Plus Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 |||| | |||||||| || ||||| |||||||||| |||||| | || || | Sbjct 1757 ACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGTTCGTTCGAAA 1816 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 |||| |||||||| | || || ||||| || | ||||||||| || || ||||| ||| Sbjct 1817 ATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCGAAACTCCCAC 1876 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 ||| || || |||||||| ||||| ||||| | ||||||||| ||||||| || || | Sbjct 1877 TAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAAATTCGCCGATT 1936 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | || ||||||| || ||||| || ||||| || || | ||| |||| ||||| | Sbjct 1937 TGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGTAAAGTTTCAA 1996 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 || || |||| | || ||||| | | |||||| || || ||||| |||| ||| Sbjct 1997 CGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCAATTAGAAGAC 2056 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 ||||| || ||||| ||||| ||||| |||||||| || ||||||||||| | |||| Sbjct 2057 TGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAACAACGTGCTT 2116 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || || || |||||||| || | || || | |||||| || || |||||||| | Sbjct 2117 CGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACAATACCATCAG 2176 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT 93563 ||||||| ||||| || | || ||| ||||| || ||| ||| || || Sbjct 2177 ATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGTTTTAGTGCAT 2236 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||||||| | | |||||||| || || |||||||| | |||||||| |||||||| | Sbjct 2237 CCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAATGATGCTTCCG 2296 Query 93624 C 93624 | Sbjct 2297 C 2297 Score = 150 bits (166), Expect = 2e-31 Identities = 204/280 (73%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 ||||| || |||||||||||||| || ||||| | | ||| ||||||||||||| Sbjct 1396 TAGAAGTCGGCATCTAGTGTAAACACGTTGTCCAAACGGTTCGA---CATAACACCACAT 1452 Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || || ||||| | ||||||||||| ||||||||||| || || ||||| ||||| ||| Sbjct 1453 TTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAATGATAT-GAA 1511 Query 92863 TTCACT--AG-TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 ||| | || ||| |||||| |||| || ||| |||||| ||| || | Sbjct 1512 TTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAATTCACCGAG 1571 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||| | |||||| ||||| || || || ||||||||||| ||||||||||| || || | Sbjct 1572 TAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAATTCATACCAAGCAT 1631 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATT 93019 ||| || | || || || || || |||| || ||| Sbjct 1632 GTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAATT 1671 >seq9058 Length=1909 Score = 140 bits (154), Expect = 4e-28 Identities = 88/94 (94%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||| Sbjct 939 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCTATTGGGA 998 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||||| ||||||||||||| Sbjct 999 GCGTGGGTTCGAACCCCACATCTGACAAATTATT 1032 >seq90021 Length=1315 Score = 125 bits (138), Expect = 8e-24 Identities = 87/98 (89%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| ||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 671 AGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCTATTGGGAGC 730 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGA 126360 |||||||||||||||||| |||||||| | || | ||| Sbjct 731 GTGGGTTCGAACCCCACATCTGACAAAATTTTTTGGGA 768 >seq15008 Length=13832 Score = 125 bits (138), Expect = 8e-24 Identities = 85/93 (91%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 6044 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAATTGGGAGC 6103 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATT 126354 |||||||||||||||||| |||||| |||| || Sbjct 6104 GTGGGTTCGAACCCCACATCTGACATAATTTTT 6136 >seq178002 Length=1460 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 632 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAATTGGGAGC 573 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| |||||| Sbjct 572 GTGGGTTCGAACCCCACATCTGACA 548 >seq79406 Length=4717 Score = 122 bits (134), Expect = 1e-22 Identities = 86/96 (90%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 126255 TTCTATTTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC 126313 ||| || |||| ||||| ||||||||| |||||||||||||||||||||| ||||||||| Sbjct 469 TTCGATATACAAGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCC 410 Query 126314 C--TCGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 | | |||||||||||||||||||||||| |||||| Sbjct 409 CTATTGGGAGCGTGGGTTCGAACCCCACATCTGACA 374 >seq56087 Length=9830 Score = 113 bits (124), Expect = 5e-20 Identities = 77/86 (90%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC---TCGGGAGC 126322 ||||| ||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 4972 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAATGGGGAGC 4913 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| ||||||||| ||||||| Sbjct 4912 GTGGGTTCAAACCCCACATCTGACAA 4887 >seq27850 Length=2375 Score = 113 bits (124), Expect = 5e-20 Identities = 84/97 (87%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 126272 TTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGGGTT 126329 ||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||| Sbjct 473 TTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAATTGGGAGCGTGGGTT 414 Query 126330 CGAACCCCACACCTGAC---AAATTATTATTGGAATT 126363 ||||||||||| ||||| || || ||||| |||| Sbjct 413 CGAACCCCACATCTGACACAAAGTTTTTATTTCAATT 377 >seq12586 Length=2214 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1864 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1923 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 1924 TGGGTTCGAACCCCACATCTGACA 1947 >seq18736 Length=2361 Score = 104 bits (114), Expect = 3e-17 Identities = 69/76 (91%), Gaps = 2/76 (3%) Strand=Plus/Minus Query 126272 TTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGGGTT 126329 ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 2274 TTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGCGTGGGTT 2215 Query 126330 CGAACCCCACACCTGA 126345 ||||||||||| |||| Sbjct 2214 CGAACCCCACATCTGA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555560084543360