Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq105237 131 1e-25 seq77412 111 1e-19 seq47011 102 7e-17 seq53184 93.3 4e-14 >seq105237 Length=11214 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| ||||| ||||| |||| ||||| ||||| ||| | || ||||| Sbjct 8880 AAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCA 8939 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | ||| | || ||| |||||| || |||||||| |||| ||| Sbjct 8940 TCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGAT 8999 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | || |||| ||| ||||||||||| |||||| | ||| || | ||||| Sbjct 9000 CAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTAC 9059 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| ||||| || || ||| ||||||| ||| | ||||| || ||||| Sbjct 9060 AATATCCAAAAGGAGTCGACATTACATTTGGTGCTCCGTCTCCGTGGTGG 9109 >seq77412 Length=2780 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | ||||| || || || || | ||| ||||| Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| ||||||||||| |||| |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||| | | || | ||| || ||||||||||||||| || | | ||| ||||||| | Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTAT--CCGATTACA 166 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||||||||||||| ||||| || | ||||| || ||||| Sbjct 165 ACATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGTCTTCGTGGTGG 117 >seq47011 Length=3271 Score = 102 bits (112), Expect = 7e-17 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || || || ||||| ||| | || || || | Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || | | | || || ||||| ||||||||||| |||| |||||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || ||||||||||||||| || || | ||||| ||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC---GCGGTGGCAATAAA 111420 || ||||| ||||| ||||| ||||||||| | ||||| | |||||| ||| ||| Sbjct 1507 ATCCAAAAGGAATCCACACTTCATTTAGTGCTCCGTCTTCGTGGCGGTGCCAAGAAA 1451 >seq53184 Length=5087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| || | || || ||||| || || | || ||||| Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||||| || |||||||| |||| || ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || |||||||| | |||||| ||| | | || || ||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATAAAT 111421 || |||||||| |||||||| |||||||| || ||||| ||||| || |||||||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGGCCAATAAAT 4415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || || || | || || ||||| || || | || ||||| | Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | |||||| |||||| || |||||||| |||| |||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || |||||||| |||||| | || || | ||||| || Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| ||||| || || || | ||||| || ||||| Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGG 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422076566588800