Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq146712 228 7e-55 seq77412 181 9e-41 seq105237 152 4e-32 seq53184 152 4e-32 seq47011 129 5e-25 seq184144 98.7 8e-16 >seq146712 Length=6971 Score = 228 bits (252), Expect = 7e-55 Identities = 1045/1640 (64%), Gaps = 63/1640 (4%) Strand=Plus/Plus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 ||| || |||||||||| ||||||| || || ||||| ||||| | ||| ||||| || Sbjct 2380 CTTATCAACGGTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCC 2439 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 ||||| || || | |||||| | | ||||| | || | | | |||| | || Sbjct 2440 AGTTTTTAATCCCATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTTCCGTAATTTGG 2499 Query 128898 TT-GACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 || | || | |||||||| ||||| |||||||| ||||| | || ||||| || | Sbjct 2500 TTCGGCT-ACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGATCCGCGG 2558 Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGT 129016 |||| ||| | |||| ||| || |||||| || ||||| ||||| | | | | Sbjct 2559 CCATCTTAATTAGCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCACGAATTT 2618 Query 129017 GTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATA------ATTTTG- 129069 || || ||||||||||| || || | || || |||||| |||||| Sbjct 2619 CTTGCGGGATTTCTTCAATATTTTGAATTGAACCATTTGCCGCAATANTCAATATTTTGA 2678 Query 129070 ---------TTT--CGCA--------------TCTGT--TCGTTGTACAAATTCAGTTTG 129102 ||| |||| | ||| || | ||| || | || | Sbjct 2679 ATTAAACCATTTACCGCAATAACGCGATTTTTTATGTCATCATCCCACAGATCTAATTCG 2738 Query 129103 ATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGA 129162 | || || | |||| | | ||||| ||||||||| ||||| | | || || | Sbjct 2739 GTTAAGTCCTTTATCAAATGGTGGTTTACTACTTGAAATTCACCAGAAAGTACACGTCT- 2797 Query 129163 ACGTAAATGTTGTTG--GTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCG 129220 |||| || ||| || | || || || |||||||| || || || ||||| || | Sbjct 2798 -CGTATATACGTTTGACGTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTGCGG 2856 Query 129221 TTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGT 129280 | | || || ||||| ||| | | ||| || |||| | || |||| || | Sbjct 2857 TAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCTTCGCGATTT 2916 Query 129281 CtttttttAATTGTGTCCAGTCCCACATCGATGTGGGTGTGTGATTCCACAAGTCGTATT 129340 | || || ||||| ||||| | ||| || || | |||||||| || || | Sbjct 2917 TTGCCTTCAACGCGGTCCAATCCCATAAATCTGTTGGAGTTTTATTCCACATATCATACT 2976 Query 129341 GCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTT- 129399 |||| || || ||| | ||||| || | |||| ||| ||| ||| Sbjct 2977 GCAAGATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGTAGGTGCC-TAATTTTTCA 3035 Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTC 129459 || | ||||||||| ||||| ||||| || | || ||||| ||| ||||| ||| Sbjct 3036 GCTAGTTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCTGGTTT 3095 Query 129460 AACACTTTGGCCTGGTCGCTTTCGTACGGCATA-CGCA---ACATGGCAAATGTGTCGGC 129515 || | || |||| || ||||| || | |||| |||| | ||| |||| || || Sbjct 3096 AATAATTGTGCCTCTTCACTTTCATATG-CATAACGCATTAATATG---AATGCATCAGC 3151 Query 129516 CAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAA 129575 || |||||| | ||| | || || ||||||||| | ||||||| || ||| Sbjct 3152 CATACCTTGTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTTTGCTTCAGG 3211 Query 129576 CAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTAC 129635 | |||||||| || | || || ||||| |||||||| || ||||||||| || || Sbjct 3212 GATTGGATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGTAAC 3271 Query 129636 GTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACA 129695 | ||| ||| | | ||||| ||| | | ||| | | ||||| ||||| Sbjct 3272 TTCTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAACATTTACAAACATATTGAGGGC 3331 Query 129696 AATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACT-CGACAATTTCGG 129754 || || || ||||| || ||||| ||| | ||| | || | | | |||||||||| Sbjct 3332 GATTGACGCTAAATTACAAACGGCTACTTCATCTTT-TGACGAAAATTCTACAATTTCGG 3390 Query 129755 CGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAG 129814 |||||||| | ||||||||| || | || | |||||| ||| || |||| Sbjct 3391 TACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATTACAAG 3450 Query 129815 CATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGA 129874 ||||||| |||| ||| ||||| || ||||| ||||| |||| | ||| | | | Sbjct 3451 CATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAG--CATA 3508 Query 129875 ACA-AG-TCTCGAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATA 129932 || || | | || || | | | || ||| ||| | || ||| | |||| Sbjct 3509 CCATAGAGATTGGGCTTTCACTTTGCGTAGAAAACGGCCTTCGCTTTCATATTTCTCATA 3568 Query 129933 CAGTTGTTCAAATTC--TGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACAC 129990 |||| ||||||||| || | ||| || || || |||| | |||||| Sbjct 3569 TAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCA--GGACATTCGTGAGGACAC 3626 Query 129991 ATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGG 130050 || ||| ||| | ||| ||||| || || |||||||| || ||||||| ||| || Sbjct 3627 ATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCATAGT 3686 Query 130051 GCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGG 130110 || || |||| |||||| || | ||||| ||| | || || | ||||| Sbjct 3687 GCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATCAAGA 3746 Query 130111 AAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG 130170 || || |||| || | ||||| ||||| | |||||| || | |||||| |||||| Sbjct 3747 AATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACGTTTG 3806 Query 130171 ---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAAT 130227 || ||||| ||||||| || | | ||| ||||| |||| |||| | | | Sbjct 3807 TTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGGTACAAGC 3866 Query 130228 CCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACG 130287 || || | | || ||||| | | |||| | || || |||| |||||| Sbjct 3867 CCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATACAATGAACA 3926 Query 130288 CTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAA 130347 | || ||||| || || || ||||||| || || || || | | || |||||| Sbjct 3927 TTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGTATCATAA 3986 Query 130348 ATGCCAACGATACTGTCTTC 130367 || ||| ||||||| ||||| Sbjct 3987 ATACCATCGATACTATCTTC 4006 >seq77412 Length=2780 Score = 181 bits (200), Expect = 9e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| ||||||||||| || ||||||||||||| ||| | | Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| |||||| |||||||| || || |||||||| |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| || || ||| || || | |||||||||||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | ||||| ||| | || | || || ||| Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGTCTTCGTGGTGGT 116 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 ||||||||| | | ||||| | || || ||||| ||||| ||||||||||| || Sbjct 526 GAAGTGGAACCATCAGATACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGA 467 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 |||||||| ||||||||||||||||| || || ||||| || ||||| ||| || || Sbjct 466 ATTCCACCAGATCAACAACGTCTTATTTTCGCTGGCAAGCAATTAGAAGATGGTCGTACA 407 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | |||||||||||||||||||| |||||||| | ||||| || Sbjct 406 TTATCCGATTACAACATTCAAAAGGAATCCACACTTCATTTGGT 363 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| ||||||||||| || | || | ||||||||| | | Sbjct 115 ATGCAGATCTTTGTAAAAACCTTAACCGGTAAGACAATTACCTTGGAAGTGGAACCATCA 56 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||||| | || || ||||| ||||| ||||||||||| || |||||||| Sbjct 55 GATACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGAATTCCACC 3 >seq105237 Length=11214 Score = 152 bits (168), Expect = 4e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||| || |||||||| ||||| ||||| || || || || || |||| ||||| || | Sbjct 8875 TTGTCAAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCG 8934 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 || | | ||||| | || || ||||| |||||||| || || || |||||||||| Sbjct 8935 AACCATCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCAC 8994 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | |||||||||||||| || ||||| |||||||| ||||| ||| | | || | || | Sbjct 8995 CAGATCAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTG 9054 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||| || ||||| || || || ||||||| || Sbjct 9055 ATTACAATATCCAAAAGGAGTCGACATTACATTTGGT 9091 >seq53184 Length=5087 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || |||||||| |||||||| |||| | || || ||| | | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||| ||||| || || || |||||||| || ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || |||||||||||| |||| ||| || || | || || ||||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || || | |||||||| || || | ||||| || Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGG 4424 Score = 152 bits (168), Expect = 4e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || |||||||| |||||||| |||| | || || ||| | || Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||||||||| || || || |||||||| |||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||| ||| || || | || ||||||||| Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| |||||||| Sbjct 4698 ATCCAAAAGGAATCCAC 4682 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 ||||||||||| || | ||| | ||||| ||| | |||| ||| | || | | ||| Sbjct 5085 TTAACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAA 5026 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || ||||| || || || || ||||| |||||||||||| | || ||||| || Sbjct 5025 GCCAAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGT 4966 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 ||||| || || ||| || || | ||||| |||||||| ||||| ||||| || | Sbjct 4965 AAACAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTT 4906 Query 22420 CATTTAGT 22427 ||||| || Sbjct 4905 CATTTGGT 4898 >seq47011 Length=3271 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || || || | || ||||| || || | || Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| ||||| |||||||| || || |||||||| |||||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||| || || ||| || ||| | || |||||||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| |||||||| | |||||||| Sbjct 1507 ATCCAAAAGGAATCCACACTTCATTTAGT 1479 >seq184144 Length=1006 Score = 98.7 bits (108), Expect = 8e-16 Identities = 136/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 22210 TTTGTAAAGA-TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGT 22268 ||||| ||| |||| || ||||| || ||| |||| || ||||| | ||||| | ||| Sbjct 259 TTTGTTTAGAATGCAGATCTTTGTAAACACTGTAACAGGAAAAACAATTACTCTAGCAGT 318 Query 22269 GGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 ||| | |||||||| | | |||||| | || |||||||| ||| | | |||| Sbjct 319 AGAACCATCCGATACCATCAAAATAATCAAAAACAAGATTCAAGAAAAGCAAAGAATTCT 378 Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 ||| ||||||||||| ||||| ||||| || ||||| | || ||| | | || | || Sbjct 379 ACCGGATCAACAACGCCTTATTTTTGCAGGTAAACAACTTGAAGATGAACAAACAATTTC 438 Query 22389 CGATTACAA 22397 ||| || || Sbjct 439 CGACTATAA 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418772109354160