Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq77412 140 3e-28 seq53184 127 2e-24 seq47011 111 1e-19 seq105237 109 5e-19 >seq77412 Length=2780 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | ||||||||||||||||||||||||||| Sbjct 114 ATACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCG 173 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||||||||| || |||| | ||| ||||| || || Sbjct 174 GATAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGT 233 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || ||| ||| | | ||||| ||||| | | ||| Sbjct 234 GGAATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCT 293 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| | |||||||| ||||| ||||| Sbjct 294 ACTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || ||||| |||||||||||||||||| Sbjct 342 ATACCACCACGAAGACGAAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCG 401 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||| || |||||| | || ||||| ||||| || || Sbjct 402 GATAATGTACGACCATCTTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGT 461 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||| ||||| ||||| Sbjct 462 GGAATTCCTTCCTTGTC 478 >seq53184 Length=5087 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | || || || | || ||||| ||||| ||||||||||| Sbjct 4649 ATACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCC 4708 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | |||||||||||| |||| | ||| ||||| || || Sbjct 4709 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGT 4768 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||| || ||||| | |||| ||| |||| | ||| Sbjct 4769 GGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCA 4828 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | ||| ||||| ||||| ||||| Sbjct 4829 ACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | |||||||| ||||| |||||||| ||| Sbjct 4877 ATACCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCG 4936 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | |||||||||||| |||| | ||| ||||| || || Sbjct 4937 GATAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGT 4996 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || ||||| ||||| | ||||| |||||||| | ||| Sbjct 4997 GGTATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCT 5056 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || |||| || | || || ||||| Sbjct 5057 ACTTCCAAAGTAATTGTCTTACCGGT 5082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 ||||| || || | || |||||||| | ||||| ||||||||||| ||||| || Sbjct 4424 CCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAA 4483 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| || ||||| || ||| | || | ||| |||||||| || ||| Sbjct 4484 AGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGA 4543 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || |||||||| || || || ||| | | |||| ||| || | | ||| || Sbjct 4544 ATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACC 4603 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || | ||| || || ||||| ||||| Sbjct 4604 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 >seq47011 Length=3271 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | |||||||| | || ||||| ||||| || |||||||| Sbjct 1460 ACCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGA 1519 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| | ||||||||||||| | || | ||| ||||| || || || Sbjct 1520 CAAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGG 1579 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| || || || | | ||| | || |||| | || || Sbjct 1580 AATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAAC 1639 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | || || || || || ||||||||||| || |||||| Sbjct 1640 CTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCATG 1688 >seq105237 Length=11214 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||||| || || || ||||| || |||||||| Sbjct 9112 ATACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCA 9053 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | |||||| | |||||| || || | |||||||| ||||| || || Sbjct 9052 GACAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGT 8993 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||| || ||| | | ||||| || || | | |||| Sbjct 8992 GGAATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCG 8933 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||||||||| || ||||| Sbjct 8932 ACCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419177583816768