Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7360 105 7e-18 seq105237 102 9e-17 seq24381 102 9e-17 seq11180 102 9e-17 seq53184 100 3e-16 seq64780 98.7 1e-15 seq20119 96.9 4e-15 seq47011 84.2 2e-11 >seq7360 Length=8995 Score = 105 bits (116), Expect = 7e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 || || ||| || ||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 7420 TTAATAAAAGATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 7361 Query 57052 ACATACTCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||||||||| Sbjct 7360 GGATACTCACCACTATACTACCGAGGAT 7333 >seq105237 Length=11214 Score = 102 bits (112), Expect = 9e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| ||||| ||||||||| ||||||||||||| || || | | Sbjct 9098 ACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCC 9039 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||| || || || || || ||||| || || || || | ||| | | || || Sbjct 9038 ATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 8979 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| |||| | ||||| | | | || || | ||| || || | |||| Sbjct 8978 ATCC-TGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGA 8920 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 |||| |||||||| | || |||||||||||||||||||| || Sbjct 8919 TGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTTGAC 8877 >seq24381 Length=11196 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 4390 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4449 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 4450 TGACCACTATACTACCGAGGA 4470 >seq11180 Length=6947 Score = 102 bits (112), Expect = 9e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 56993 TTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 |||| ||| || | |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 795 TTATAAAAGATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 736 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||||||||||| Sbjct 735 GATACTTACCACTATACTACCGAGGA 710 Score = 102 bits (112), Expect = 9e-17 Identities = 84/102 (82%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1144 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1085 Query 57067 TACTACCGAGGATTGAATATA---TAACTTGAATATTGCAAT 57105 ||||||||||||| | | || ||| || ||||||| || Sbjct 1084 TACTACCGAGGATATATTTTATCGTAATCTGGATATTGCCAT 1043 >seq53184 Length=5087 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 41961 TTATATATATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCC 42020 ||| | | || ||||||| | || || | | ||| || || ||||| | ||| ||| Sbjct 4403 TTAAAGAAATAAATTTATTGGCCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCT 4462 Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 |||||||||||||| |||| || || ||| | || |||||||| || || ||||| || Sbjct 4463 TTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATT 4522 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 42140 | || || ||||| | ||| | | || || || |||||| ||||| || | Sbjct 4523 AAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCA 4582 Query 42141 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 | || || || ||| || || | ||||| ||||| || |||| ||||| || || Sbjct 4583 ATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAA 4642 Query 42201 ATTTGCAT 42208 |||||||| Sbjct 4643 ATTTGCAT 4650 >seq64780 Length=6030 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2610 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2551 Query 57067 TACTACCGAGGATTGAATATAT 57088 ||||||||||||| | ||||| Sbjct 2550 TACTACCGAGGATATATTATAT 2529 >seq20119 Length=8179 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 4245 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4186 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 4185 TGACCACTATACTACCGAGGA 4165 >seq47011 Length=3271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| ||||| | |||| |||||||| ||||||||||| | || || ||| | Sbjct 1472 ACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCC 1531 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | || ||||||||||| || | || || || || | ||| | | || || Sbjct 1532 ATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTT 1591 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| |||||| |||| | | | || ||| | || || || | || || Sbjct 1592 GTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTAT 1651 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || ||||| || || ||||||||||||||||| Sbjct 1652 GGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541943963541760