Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq146712 140 3e-28 seq77412 131 2e-25 seq53184 129 6e-25 seq105237 113 4e-20 >seq146712 Length=6971 Score = 140 bits (154), Expect = 3e-28 Identities = 456/697 (65%), Gaps = 31/697 (4%) Strand=Plus/Plus Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 |||||||| | |||||||| ||| |||||| || | |||| ||||| ||||| Sbjct 3381 ACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTT 3440 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751 || || || ||||| |||| || ||||| || ||||| ||||| |||||||| Sbjct 3441 CGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATA 3500 Query 154752 ATTG--TGCGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCAT 154809 || | | | | | ||| | || ||| ||| || ||| || |||||| |||| Sbjct 3501 ATAGCATACCATAGAGATTGGGCTT-TCACTTTGCGTAGAAAA-CGGCCTTCGCTTTCAT 3558 Query 154810 ATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACA-CGTCCGACAA-ACCGGGACAGCG 154867 ||| || || ||||||||||| || | || || | || || ||| ||||| Sbjct 3559 ATTTCTCATATAGTTTTTCAAATTC--ATCTCCCCAACAATCGTGAAGACCAGGACATTC 3616 Query 154868 GTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGG 154927 || |||||||| || ||||| ||| ||| || ||||| |||||||| || || || Sbjct 3617 GTGAGGACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGG 3676 Query 154928 CACCCACAAAGCGTACAACAAATCACGCGCCTT---TTTGTCTTCAGCGCCCATGTTTCG 154984 | ||| | || || |||| ||| || ||| | || |||| | || | ||| Sbjct 3677 TATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTA---CCTGTATTTTT 3733 Query 154985 CTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGC 155044 |||||||| | ||| ||| | || || | ||||| || |||| ||| | ||| | || Sbjct 3734 CTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGC 3793 Query 155045 GCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAA 155101 ||| ||||| || |||||||| |||| || || |||||||||||| | || Sbjct 3794 GCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAA 3853 Query 155102 CAATGGTTCCACGCCGCTGGCCGTGCCGTTGGT----GCCACGT---ATCGCGCTGCCGC 155154 ||| ||| | | || | | | || || || || | | ||| | || | | Sbjct 3854 CAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTTG-CTC 3912 Query 155155 GAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCAC 155214 || || ||||||||||| ||| | |||||| | |||| || ||| |||| Sbjct 3913 GAATAC------AATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCAC 3966 Query 155215 AGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAAC 155274 | | ||| || || || || || | ||| || ||||| || || ||||| || | Sbjct 3967 ATTGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAACAAAAAGC 4026 Query 155275 ACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAA 155311 | || ||||| || ||| |||| || |||||||| Sbjct 4027 ATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAA 4063 >seq77412 Length=2780 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || ||||||||||||||||||||||| | | || || | || Sbjct 131 AAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATC 190 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || |||||| | || | || || || || || |||||||||||||| || Sbjct 191 TTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 250 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||||||||| ||| || | ||| || | || ||||| | ||| | | Sbjct 251 TTGGA-TTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTG 309 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||||| || |||||||||||||||||||| Sbjct 310 TCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || ||||| ||||||||||||||||| | | || || | || Sbjct 359 AAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGATAATGTACGACCATC 418 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||||| || |||| || || || || || || ||||||||||| || || Sbjct 419 TTCTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTC 478 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATC 64383 ||| | |||| ||||| ||| ||| | |||||| Sbjct 479 TTGGA-TTTTAGCTTTGACATTCTCAATTGTATC 511 >seq53184 Length=5087 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | | |||| ||||| || || ||||||||||| ||||| || | Sbjct 4424 CCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAA 4483 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| | ||||| ||||| |||||||| |||| | || || ||||| || ||| Sbjct 4484 AGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGA 4543 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| ||||| | |||| ||||| ||| ||| | |||||| | || || Sbjct 4544 ATTCCTTCTTTATCTTGGA-TTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAAC 4602 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || | || || || || ||||| || |||||||||||||| Sbjct 4603 CTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| ||||||||||| | | || || | ||||| | || Sbjct 4676 TGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCTAATTGT 4735 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || || || || || |||||||||||||| ||||| ||||| Sbjct 4736 TTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTG 4795 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 |||||| ||| | ||||| | || || |||| || | || || || || Sbjct 4796 GCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTT 4855 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||||||||||||||| Sbjct 4856 AAAGTCTTTACGAAAATTTGCAT 4878 >seq105237 Length=11214 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | ||||| || ||||| || |||||||| | | || | | ||| Sbjct 9094 AGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCT 9035 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || ||||| ||| ||||||| || || || || || ||||| |||||||| || Sbjct 9034 TCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCC 8975 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||||| ||| || | |||||| | || || || | || | ||| Sbjct 8974 TGAATTTTA-GCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGT 8916 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| ||||| |||||||| || ||||||||||| Sbjct 8915 CTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498477729676160