Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq53184 105 7e-18 seq146712 104 2e-17 seq77412 104 2e-17 seq47011 96.9 3e-15 >seq53184 Length=5087 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| || |||||||| | | ||||| |||||||| |||||||| Sbjct 4423 GCCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGA 4482 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| || || || ||||| |||| | |||| ||| |||||||| || || Sbjct 4483 AAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGG 4542 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || |||||| ||| | | || | ||| || | || || || Sbjct 4543 AATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAAC 4602 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||||||||| | ||| || || ||||| ||||| Sbjct 4603 CTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||| || || ||||| || || | ||||||||| | | Sbjct 4685 GATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCTAATTGTTTACCAGCA 4744 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||||| ||| ||||| || || || || |||||||| || ||| |||| | ||||| Sbjct 4745 AAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCT-TGAATTTTGGCTTTTAC 4803 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| |||| || || ||||| | || | ||||||||||| | ||| || Sbjct 4804 ATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTT 4863 Query 138600 TACAAAAATCTGCAT 138614 ||| ||||| ||||| Sbjct 4864 TACGAAAATTTGCAT 4878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | || |||||||| |||||||||||| Sbjct 4880 CCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGAT 4939 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||| | | |||||| ||| ||||| || || ||| Sbjct 4940 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGT 4999 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGG 138556 || |||||||| || ||| || ||||| | ||| | |||||||| Sbjct 5000 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGG 5048 >seq146712 Length=6971 Score = 104 bits (114), Expect = 2e-17 Identities = 788/1263 (62%), Gaps = 52/1263 (4%) Strand=Plus/Plus Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744 ||||||||||| ||| | || || || ||||| ||||| | ||||||||| || ||| Sbjct 2384 TCAACGGTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCCAGTT 2443 Query 152745 TTGAGGCCGCAGCG-CCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTG 152803 || | || || | ||| ||| ||||| ||||| | | |||| | |||| Sbjct 2444 TTTAATCC-CATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTTCCGTAATTTGGTTC 2502 Query 152804 CGCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCAT 152863 || ||| | ||||||||||||||| |||||||| ||||| ||| || || ||||| Sbjct 2503 GGCTACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGATCCGCGGCCAT 2562 Query 152864 CTCAATCATGCGTTTTGCCT-TCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTAT 152922 || ||| | ||||||| || || ||||| | ||||| || | | || | Sbjct 2563 CTTAATTA-GCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCACGAATTTCTT 2621 Query 152923 CCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT-AGCGTTTCGTATT 152981 ||| || ||||||| || ||||| || || || |||| | | | ||| | ||| Sbjct 2622 GCGGGATTTCTTCAATATTTTGAATTGAACCATTTGCCGCAATANTCAATATTTTGAATT 2681 Query 152982 ----------------TCGGGCG--------TGT---------ACACGTTCAGTTTAATG 153008 | ||| ||| ||| | | || | Sbjct 2682 AAACCATTTACCGCAATAACGCGATTTTTTATGTCATCATCCCACAGATCTAATTCGGTT 2741 Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 | ||| | ||||| | ||||| || |||||||| || || | | || |||||| | Sbjct 2742 AAGTCCTTTATCAAATGGTGGTTTACTACTTGAAATTCACCAGAAAGTACACGTCTCGTA 2801 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 ||||| || || | ||||| || ||||| ||||| || | ||||| || || | Sbjct 2802 TATACGTTTGACGTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTGCGGTAGAA 2861 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTC 153187 || |||||||| || | | | |||||| | | || ||| | ||| | | | | Sbjct 2862 GCAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCTTCGCGATTTTTG-C 2920 Query 153188 CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAA 153247 ||||||||| ||||||||| | | | || || |||||||| || ||||| || Sbjct 2921 CTTCAACGCGGTCCAATCCCATAAATCTGTTGGAGTTTTATTCCACATATCATACTGCAA 2980 Query 153248 CACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAG 153307 | ||| ||| | ||||| || || | || |||| |||| || || || Sbjct 2981 GATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGTAGGTGCCTAATTTTTCAGCTAG 3040 Query 153308 TTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAAC 153367 |||||| ||||| || | || || |||||||| || ||| ||||| | || | | Sbjct 3041 TTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCTGGTTTAATAA 3100 Query 153368 GGCCGCTTCTTCGCTCTCGTACGGCAT-GCGCAGCAGCACAAAGGCGTCGGCCAGACCCT 153426 || ||||| || || || |||| |||| | | || || || |||| ||| | Sbjct 3101 TTGTGCCTCTTCACTTTCATA-TGCATAACGCATTAATATGAATGCATCAGCCATACCTT 3159 Query 153427 GGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGAT 153486 | | ||| | || || |||||||| || ||| || | || | || |||| Sbjct 3160 GTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTTTGCTTCAGGGATTGGAT 3219 Query 153487 AGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAA 153546 ||| ||| ||| || ||||| || | || ||| | |||||| | | || | Sbjct 3220 AGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGTAACTTCTTTCA 3279 Query 153547 GTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACG 153606 || | ||||| || | |||| | || ||| | ||| | ||| || |||| Sbjct 3280 ACTTGTTAAAATCGTATTTTTTTTCATTAACATTTACAAACATATTGAGGGCGATTGACG 3339 Query 153607 CCAGATTACAGACGGC--CGTC-TCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGA 153663 | | |||||| ||||| | || |||| | || | | || || |||| || | Sbjct 3340 CTAAATTACAAACGGCTACTTCATCTT--TTGACG-AAAATTCTACAATTTCGGTACACA 3396 Query 153664 GGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTT 153723 ||| ||||| ||| || | |||||| |||||| ||| ||||| || || |||| Sbjct 3397 AATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATTACAAGCATCTT 3456 Query 153724 TGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA--AACCTATGCAG 153781 | | ||||| ||||| | || || || ||||| |||| | ||| | | || || Sbjct 3457 TATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAGCATACCATAGAG 3516 Query 153782 GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCG 153841 | || ||| ||| | || | ||||| ||||| || ||| ||| || ||| Sbjct 3517 AT--TGGGCTTTCACTTTGCGTAGAAAACGGCCTTCGCTTTCATATTTCTCATATAGTTT 3574 Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901 ||||| || || || | || ||| || || ||||| | || |||||||| | || Sbjct 3575 TTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTCGTGAGGACACATTAAAGA 3634 Query 153902 CCA 153904 ||| Sbjct 3635 CCA 3637 >seq77412 Length=2780 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | || || |||||||||||||| ||| Sbjct 117 CCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAT 176 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||||| | |||||| ||| ||||| || || || Sbjct 177 AATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 236 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||||||| ||| | | ||| | ||||| | | || || Sbjct 237 ATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACT 296 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||| || | |||||||| ||||| ||||| Sbjct 297 TCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq47011 Length=3271 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | |||||||| | | || |||||||| || ||||| || | Sbjct 1461 CCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGAC 1520 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||||||| | | |||| ||| ||||| || || || Sbjct 1521 AAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGA 1580 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | ||| | || |||| | ||| ||| Sbjct 1581 ATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACC 1640 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || || || ||||||||||| || |||||| Sbjct 1641 TCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCATG 1688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495103230286080