Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq53184 138 8e-28 seq77412 127 1e-24 seq47011 123 2e-23 seq105237 113 3e-20 >seq53184 Length=5087 Score = 138 bits (152), Expect = 8e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| ||||||||||| ||||| |||||||| || ||||| || || ||| | | || Sbjct 4438 TAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATC 4497 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||||| |||||||| ||| | || ||||| |||||||| |||||||||||| || || Sbjct 4498 TTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATC 4557 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 |||||| ||| ||| | || || ||||| ||| || ||||| || || || Sbjct 4558 TTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGT 4617 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| || | ||| || || |||||||||||| Sbjct 4618 TTTACCAGTTAAAGTCTTGACGAAAATTTGCATA 4651 Score = 138 bits (152), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || || ||||| || || || ||||| ||||||||||| || ||| || | |||| Sbjct 4670 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCC--GACAATGTACGACCATCTT 4727 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 |||||||||| ||||| | || ||||| ||||| || |||||||||||| || || Sbjct 4728 CTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTT 4787 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| ||||||| | || || |||||| ||| || ||||| || || |||| Sbjct 4788 GAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTT 4847 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || | ||| ||||| |||||||||||| Sbjct 4848 TACCAGTTAAAGTCTTTACGAAAATTTGCATA 4879 >seq77412 Length=2780 Score = 127 bits (140), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| |||||||| ||||| |||||||| |||||||||||| || ||| || | ||| Sbjct 134 AACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCG--GATAATGTACGACCATCT 191 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | || ||||| ||||| || |||||||||||| ||||| Sbjct 192 TCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 251 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| ||| |||| || || || |||||| || | || || || Sbjct 252 TGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTC 311 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || | |||||||| |||||||||||| Sbjct 312 TTACCGGTTAAGGTTTTTACGAAAATTTGCATA 344 Score = 100 bits (110), Expect = 2e-16 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || |||||||| || || || ||||| |||||||||||| || ||| || | |||| Sbjct 363 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCG--GATAATGTACGACCATCTT 420 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||||||| ||||||||| | || | ||| ||||| || |||||||||||||||||| Sbjct 421 CTAATTGCTTGCCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTT 480 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATC 15116 ||||| ||| ||| | || || ||||| Sbjct 481 GGATTTTAGCTTTGACATTCTCAATTGTATC 511 >seq47011 Length=3271 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025 ||||||||||| || || || ||||| || |||||||| || || | | | | |||| Sbjct 1479 ACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCC--GACAAGGTACGCCCATCTT 1536 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||||| |||||| | || ||||| ||||| || |||||| ||||| ||||| Sbjct 1537 CCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTT 1596 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||| || ||| |||| ||||||||| || || || | ||| ||||| | Sbjct 1597 GGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCT 1656 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||||||||| |||||||| Sbjct 1657 TTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq105237 Length=11214 Score = 113 bits (124), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTT 15025 || ||||| | || || || ||||| || |||||||| || ||| ||| | |||| Sbjct 9091 ACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCA--GACAATGTTCTGCCATCTT 9034 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||||||||||||| || | || | ||| ||||| || |||||| ||||| || || Sbjct 9033 CTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCT 8974 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| ||| ||| |||| || ||||| ||| || || | ||| ||||| | Sbjct 8973 GAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCT 8914 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 | || |||| ||||||||||| |||||||| ||||| Sbjct 8913 TGCCCGTCAATGTTTTTACAAAGATTTGCAT-TTTGA 8878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356578073672240