Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq47011 122 8e-23 seq77412 120 3e-22 seq105237 113 4e-20 seq53184 107 2e-18 >seq47011 Length=3271 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||| ||| || || ||||||||||||||||| ||||| | ||| ||| || Sbjct 1478 CACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTC 1537 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||||||| || ||| | || || ||||| || || || ||||| |||||||| ||||| Sbjct 1538 CAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTG 1597 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| |||| ||| | || ||||| | ||| || || || || | || || Sbjct 1598 GATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTT 1657 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| |||||||| Sbjct 1658 TCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq77412 Length=2780 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || ||||| ||||| || || |||||| | || | ||| |||||||| Sbjct 140 ATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCCAATTG 199 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || || ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 200 TTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTT 259 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | ||||| ||| | ||||| || | || ||||| ||||| | || || ||||| Sbjct 260 TGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCTTACCGGT 319 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| ||||||||||| Sbjct 320 TAAGGTTTTTACGAAAATTTGCAT 343 >seq105237 Length=11214 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | ||| | || || |||||||||||||| ||||| Sbjct 9112 ATACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCA 9053 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || |||||||| ||||| | || | ||||| || || || Sbjct 9052 GACAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGT 8993 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||| |||||||| ||||| ||| | || || || | ||| Sbjct 8992 GGAATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCG 8933 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || | ||||||||||| |||||||| Sbjct 8932 ACCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq53184 Length=5087 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || |||||||||||||| || ||||| ||| | | || ||| || |||| Sbjct 4676 TGAAGTGTGGATTCCTTTTGGATGTTGTAATCC--GACAATGTACGACCATCTTCTAATT 4733 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || || | || || ||||| || || || ||||| ||||||||||||||||||| Sbjct 4734 GTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTT 4793 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | ||| | || | ||| ||||| | || || || | || | ||||| || | Sbjct 4794 TGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTACCAG 4853 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||| ||||| ||||||||||| Sbjct 4854 TTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 45108 TTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 |||||| || ||||| || | || |||| ||| || || || || ||||| ||||| | Sbjct 4416 TTTATTGGCCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGT 4475 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 | || | ||| ||| || | ||||| || ||| | || || ||||| |||| Sbjct 4476 AGTCAGAAAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGT 4535 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAG 45285 | || ||||| |||||||||||||| ||||| ||||| || | ||| || || | Sbjct 4536 CTGGTGGAATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACG 4595 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || | ||||| || |||| ||| || || ||||||||||| Sbjct 4596 GTTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||||||||| || || ||| | || | ||| |||||||| Sbjct 4903 ATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCCAATTG 4962 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || || ||||| || || || || || |||||||||||||| || || Sbjct 4963 TTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATCTTGGATCTT 5022 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | ||| | ||||||||| | || ||||| | ||||| || || ||||| Sbjct 5023 GGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGTCTTACCGGT 5082 Query 45317 TA 45318 || Sbjct 5083 TA 5084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450947410925440