Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq146712 111 2e-19 >seq146712 Length=6971 Score = 111 bits (122), Expect = 2e-19 Identities = 234/347 (67%), Gaps = 18/347 (5%) Strand=Plus/Plus Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 || || ||| |||| || | |||||| ||||| | |||||||| |||||||||||||| Sbjct 3135 AATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGTCTCATATTG 3194 Query 116296 GAC--TTTCGAGCGGTCTCCACGG----GATAAAAATTCCTATCGATAACCCTATTTAGA 116349 || ||| | || || || |||| |||| ||| || | |||||| | Sbjct 3195 GAACGTTTTG------CTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTTAAA 3248 Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 116409 ||||| || |||| || || | ||| | | ||| | |||| | | | || Sbjct 3249 TTTTTTGTCACAATTTTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTT---TTTCA 3305 Query 116410 T---CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466 | |||| ||| || || |||||||||||||| | |||||| || | ||||| Sbjct 3306 TTAACATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCATCT 3365 Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 || | | |||| |||||| ||||||||||| |||| |||||||| || | || Sbjct 3366 TTTGACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATATTT 3425 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGG 116573 | |||||| || ||| ||||| ||||| || || |||||||| || Sbjct 3426 TGTTGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGG 3472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612074169882240