Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq115302 190 2e-43 seq47011 116 4e-21 seq105237 107 2e-18 seq53184 98.7 1e-15 seq77412 96.9 3e-15 >seq115302 Length=2783 Score = 190 bits (210), Expect = 2e-43 Identities = 376/553 (68%), Gaps = 4/553 (1%) Strand=Plus/Plus Query 132877 AAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGT 132936 ||||| || ||||| | || ||||| || || || || || ||||| || || || ||| Sbjct 1747 AAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGT 1806 Query 132937 TCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996 ||||| || ||||| || ||||||||||| |||||||| | ||||||||||| ||| Sbjct 1807 TCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCG 1866 Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC 133056 ||||| || |||||| | || || || || ||||| || | | || || || || Sbjct 1867 AAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAAA 1926 Query 133057 GTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116 | || |||||| | ||||| | || ||||| || || || | ||| || || || Sbjct 1927 TTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGT 1986 Query 133117 ATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCG 133176 | ||||| | ||| || || ||| | ||||| | || | || || || Sbjct 1987 AAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCA 2046 Query 133177 ATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAG 133236 || || ||||| || || || || || |||||||| |||||||| ||||| || Sbjct 2047 ATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAA 2106 Query 133237 CACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACG 133296 || || || ||| | || |||||||| |||||| || || | ||||||||| || Sbjct 2107 CAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACA 2166 Query 133297 ATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTC-GTTGTC 133355 || || || || |||||||| || || |||||| || || || || || | | Sbjct 2167 ATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACG-- 2224 Query 133356 GTTCAAGCGC-TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAA 133414 ||| || || ||||| || | |||| || || ||||| || || || | ||||||| Sbjct 2225 GTTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAA 2284 Query 133415 ACGACGCCTCGGC 133427 | || || || || Sbjct 2285 ATGATGCTTCCGC 2297 >seq47011 Length=3271 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || ||||| || ||||| ||| | || || ||| | || Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | ||||||| |||||||| || ||||| | || ||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || ||||| |||| || | ||| ||| | || ||||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||||| ||||| ||| | | ||||| Sbjct 1507 ATCCAAAAGGAATCCACACTTCATTTAGTGCTCCGTCTTCGTGGCGG 1461 >seq105237 Length=11214 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || |||||||| | |||||||| ||||||||| | || ||||| | Sbjct 8880 AAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCA 8939 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| ||||| | || ||||| || ||||| | || Sbjct 8940 TCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGAT 8999 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || ||||||| || |||||||| | || || | | || | || ||| Sbjct 9000 CAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTAC 9059 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||||| |||| | ||||||||||| ||| Sbjct 9060 AATATCCAAAAGGAGTCGACATTACATTTGGTGCTCCGT 9098 >seq53184 Length=5087 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || ||||| ||||| | || || || | | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | |||| ||||||| || ||||| |||||||| | |||||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| ||||||||||| || || | ||| || || |||||||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || ||||| || | || || ||||| || | ||| | | ||||||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGGCC 4422 >seq77412 Length=2780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||||||||| | || || || || ||||| | || || || | | Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| |||||||| |||||||| |||||||| | || ||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| |||| || | || || | ||| |||||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||| | || || |||||||| || ||| Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGT 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499004496373760