Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq146712 82.4 9e-11 seq39338 82.4 9e-11 >seq146712 Length=6971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 109707 ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGT 109766 ||| | ||| || || ||||||||||| |||| |||| || | ||| | ||| Sbjct 2756 ATGGTGGTTTACTACTTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGT 2815 Query 109767 GTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGG 109826 |||||||||||| | ||||| || || | |||||||| || ||||| || ||||| || Sbjct 2816 ATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCATTGG 2875 Query 109827 AGCCATGAGAAGA 109839 ||| | ||||||| Sbjct 2876 AGCTAAGAGAAGA 2888 >seq39338 Length=6174 Score = 82.4 bits (90), Expect = 9e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC-CCGT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| | |||||| || || Sbjct 2775 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGTGAGTTCGATCCTCCCA 2716 Query 136776 TGGG--AACAGCTTTTAGATATATTTTTTGTATGTATATGTAA 136816 |||| | | |||| || |||| |||||||||| |||||| Sbjct 2715 TGGGCCATAATTTTTTTTATTTATTATTTGTATGTA-ATGTAA 2674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587600269859200