Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq77412 163 6e-35 seq53184 163 6e-35 seq105237 152 1e-31 seq47011 149 1e-30 >seq77412 Length=2780 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || ||||||||||| |||||||||| | || | |||||||| | || Sbjct 141 TGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCCAATTGT 200 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | |||||||| ||||| ||||| |||||||||||||| |||||| Sbjct 201 TTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTT 260 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| ||||| || ||| |||||||| || | ||||| || || Sbjct 261 GCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCTTACCGGTT 320 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| | |||||| Sbjct 321 AAGGTTTTTACGAAAATTTGCAT 343 >seq53184 Length=5087 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || |||||||||||||||||||| || | ||| |||| ||||||||| ||||| Sbjct 4448 TGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTCTAGCTGT 4507 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | |||||||||||||| ||||| |||||||| ||||| ||||| Sbjct 4508 TTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGGATTTTG 4567 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| ||||||||||| || || ||| || || | || | || || || || Sbjct 4568 GCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTTACCAGTT 4627 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | |||||| Sbjct 4628 AAAGTCTTGACGAAAATTTGCAT 4650 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| || ||||| || |||||||| | | || | |||||||| | || Sbjct 4675 GTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCTAATTG 4734 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct 4735 TTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTT 4794 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||| || || ||| || || | || | || || || || Sbjct 4795 GGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTACCAGT 4854 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||| |||||||| | |||||| Sbjct 4855 TAAAGTCTTTACGAAAATTTGCAT 4878 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || ||||| || ||||| |||| | || | |||||||| | || Sbjct 4904 TGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCCAATTGT 4963 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | |||||||| ||||| || || |||||||| ||||| || || Sbjct 4964 TTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATCTTGGATCTTG 5023 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || ||||| ||||||||||| || ||| ||||| | |||| ||||| || || Sbjct 5024 GCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGTCTTACCGGTT 5083 Query 195118 AA 195119 || Sbjct 5084 AA 5085 >seq105237 Length=11214 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| ||||||||||| | | ||||| |||||||| | || || ||| Sbjct 9079 GTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTCTAATTGTTTGCCT 9020 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || |||||||| ||||| ||||| |||||||| || |||||||| ||| Sbjct 9019 GCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGAATTTTAGCTTTG 8960 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || || ||| || |||||||| | ||||| || ||||| ||| Sbjct 8959 ACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTCAATGTT 8900 Query 195124 TTTACGAACACTTGCATTT 195142 ||||| || | |||||||| Sbjct 8899 TTTACAAAGATTTGCATTT 8881 >seq47011 Length=3271 Score = 149 bits (164), Expect = 1e-30 Identities = 157/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAAT-CGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| ||||| || ||||| |||||||||| || |||| || | ||||||||| | || Sbjct 1485 TGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAG-GTACGCCCATCTTCCAATTG 1543 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| ||||| || | |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 1544 TTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTGGATTTT 1603 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || || || || || || || |||||||| | |||||||| || Sbjct 1604 AGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTTTCCCGT 1663 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | |||||| Sbjct 1664 AAGTGTTTTTACAAAGATTTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106825284700688