Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq146712 423 2e-113 seq115302 309 3e-79 seq7872 93.3 5e-14 >seq146712 Length=6971 Score = 423 bits (468), Expect = 2e-113 Identities = 1130/1731 (65%), Gaps = 91/1731 (5%) Strand=Plus/Plus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| || || |||| ||||||||| ||||| ||||| || | |||| ||||| ||| Sbjct 2411 GCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAA 2470 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 || ||| ||||| || ||| | ||||| | | || ||||||| ||||| || Sbjct 2471 TGAATAGAAGTTAGCTTTCCGTAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTT 2530 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTG--TGGTATCT 47181 ||||| ||||| ||||| | ||| || ||||| || || || | ||| || | | Sbjct 2531 TGATCTATAAAAGCACCACGATCCGCGGCCAT--CTTAATTAGCGTTTTAACTGACACTT 2588 Query 47182 CCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAG 47238 |||||||||||||||||| ||| |||| |||| | | |||||||||| | Sbjct 2589 CCCATACTGTTTTATAAAGACCACGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTG 2648 Query 47239 ATCCT----CCg---ttttctataattttg----------------------------tt 47263 | || ||| | || ||| ||||| || Sbjct 2649 AACCATTTGCCGCAATANTCAATA-TTTTGAATTAAACCATTTACCGCAATAACGCGATT 2707 Query 47264 ttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAAC 47323 ||||| |||| ||| || | | ||| ||||| |||| | ||| | || || Sbjct 2708 TTTTATGTCATCATCCCACAGATCTAATTCGGTTAAGTCCTTTATCAAATGGTGGTTTAC 2767 Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 | ||||||||| ||||| ||||| | | |||||| || ||||| ||||| | Sbjct 2768 TACTTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGTATAGGGTTCGAA 2827 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA- 47442 ||||||||||||||| |||||||| || || || || || ||||| || | |||| | Sbjct 2828 AGATTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCAT---TGGAGCTAAGAG 2884 Query 47443 -AGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAG 47500 || | ||||| ||||||| || || | |||||||||| | Sbjct 2885 AAGAGAATTTCTAACTCCATGCTTCGCGATTTTTGCCTTCAACGCGGTCCAATCCCATAA 2944 Query 47501 ATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACC 47560 ||||| |||| |||||| | |||||| || | || |||||||||| ||| || Sbjct 2945 ATCTGTTGGAGTTTTATTCCACATATCATACTGCAAGATGCCTTTACTTACTGGACTTCC 3004 Query 47561 ATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACT 47620 | |||||||| || | || || || ||| ||||| ||||| ||||| ||||||| Sbjct 3005 TTCATATGTTTCGTAGGTGCCTAATTTTTCAGCTAGTTCGCAACTAGCTTCTAATGCACC 3064 Query 47621 ATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT-TGCTTCTGATGATTCAAAAG 47679 || |||||||| || || |||| ||||| || | ||| ||| |||| | | Sbjct 3065 GTAGTATATTGTCTCGAAAATTTGCTGGTTTA-ATAATTGTGCCTCTTCACTTTCATATG 3123 Query 47680 GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTAT 47739 ||| |||| ||| |||| ||||| |||||||| |||||||||| || Sbjct 3124 CATAACGCATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGAT 3183 Query 47740 GAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTAT 47799 | | |||| ||| | ||||| || | |||||| | || | ||| || ||||||| Sbjct 3184 GTCTCATATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTAT 3243 Query 47800 TTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT 47859 ||| | || |||| | || || |||||||| | || || | Sbjct 3244 TTAAATTTTTTGTCACAATTTTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTTT 3303 Query 47860 --TTA----TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 ||| | |||||| |||| || || || || |||| |||||| || ||||| |||| Sbjct 3304 CATTAACATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCAT 3363 Query 47914 --TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAA 47971 || || | | ||| || ||||| | ||| | ||| |||||| || ||||| | Sbjct 3364 CTTTTGACGA--AAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGAT 3421 Query 47972 ATTTTGATGATT--ATTNNNNTTG-TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCC 48028 |||||| ||||| ||| | | ||||| || || || || |||||| | || ||| Sbjct 3422 ATTTTGTTGATTGGATTT---TCGATTACAAGCATCTTTATACAGCATATACGGAACTCC 3478 Query 48029 AGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC-----CTTT------ 48077 |||||| | ||| |||||| |||| | ||| | || || |||| Sbjct 3479 AGTTTCAACTTGACTTTCAATAATAGCATACCATAGAGATTGGGCTTTCACTTTGCGTAG 3538 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC- 48136 | ||| || | ||||| ||| ||| || |||| || ||||||||||| Sbjct 3539 AAAACGGCCTTCGCTTTCATAT----TTCTCATATAGT-------TTTTCAAATTCATCT 3587 Query 48137 CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 ||| ||| || | | ||||||||||| | ||||||||| || |||||||| |||| Sbjct 3588 CCCCAACA-ATCGTGAAGACCAGGACATTCGTGAGGACACATTAAAGACCAATCTTCATT 3646 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 || || | ||||||||| || |||||||| || || ||| | ||| | | Sbjct 3647 TGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGC 3706 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 || | ||| || || || |||| | || | |||||||| || | |||||| |||| Sbjct 3707 CCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATG 3766 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||| ||||||| ||| || || | | | || || ||||| ||||| |||||||| | || Sbjct 3767 CCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTA 3826 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | |||||||| || || |||||||||| || |||| ||||| || |||||||| || Sbjct 3827 CCGAGCAGTATTATTGTACACTCTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGT 3886 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 |||| |||||| ||| | |||| ||| | || || |||||||| ||||| Sbjct 3887 ACCCGCAATATATGATCCCTTTGCTCGAATACAATGAACATTAAGGCCTATACCTCCTGC 3946 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 ||| || |||| ||||| |||| | ||||||||||| || || |||||||| || Sbjct 3947 AGATTTTGAAATTAATGCACATTGTTTCAATGTATCATAAATACCATCGATACTATCTTC 4006 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 ||| |||| | ||| || || | || || || ||||| | ||| | Sbjct 4007 CGACATTGTTAACAAAAAGCATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACAT 4066 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 ||||| || |||||| | || || | || ||||| || || || ||||| Sbjct 4067 CGTTGGTGAGGCATGAGTGAAATATCTTTCCGATAATAAATTGTACGTTTC 4117 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 48692 ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATT 48751 ||| ||||| || | || ||||| | ||||| ||||||||||| ||||||| || Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAATTTTTCGTTT 4570 Query 48752 TATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 |||||||| | ||| ||| ||||||||||||||| |||||||| ||||| ||| || Sbjct 4571 AATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAATC 4630 Query 48812 GTTATCATTAATAATTGATGAATTTATTC 48840 ||||| ||| || | |||||||| || Sbjct 4631 ACGATCATAAATTATAGCTGAATTTAATC 4659 >seq115302 Length=2783 Score = 309 bits (342), Expect = 3e-79 Identities = 398/549 (72%), Gaps = 0/549 (0%) Strand=Plus/Plus Query 18945 ATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 |||||||||||| | ||| ||||||||||| |||| ||| |||||||| ||| | ||| Sbjct 1749 ATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGTTC 1808 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 || |||||||| ||||| ||||| || || | |||||| ||||| ||||| || || || Sbjct 1809 GTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCGAA 1868 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT 19124 ||| |||||| || ||||| || ||||| || |||| | | ||| ||| || | Sbjct 1869 ACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAAATT 1928 Query 19125 AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCAT 19184 || || | |||||||| || ||||| ||||| ||||||||||||||||| | Sbjct 1929 CGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGTAA 1988 Query 19185 TGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTAT 19244 || || | | ||| |||| | | |||||| | || |||| | ||| | ||| || Sbjct 1989 AGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCAAT 2048 Query 19245 CAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACA 19304 | | ||||||||| || ||||||| |||||| || || || ||||| ||||| ||||| Sbjct 2049 TAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAACA 2108 Query 19305 TCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTAT 19364 | |||||| ||||| || ||||| | || | ||| || |||||||| || || || Sbjct 2109 ACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACAAT 2168 Query 19365 TCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGT 19424 |||||| ||||| |||||||| | ||| || |||||| || |||| | | Sbjct 2169 ACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGTTT 2228 Query 19425 TAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 || || || ||||||| || ||||| |||| || ||||||||| |||||||||| || Sbjct 2229 TAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAATGA 2288 Query 19485 AGCCTCTGC 19493 || || || Sbjct 2289 TGCTTCCGC 2297 Score = 147 bits (162), Expect = 2e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||||||||| ||| ||||||| |||||||| ||||| ||||| |||||||| | Sbjct 1452 TTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAATGATATGAA 1511 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| || | ||||||||||| || || ||||||| | ||| ||||| || Sbjct 1512 TTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAATTCACCGAG 1571 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || | ||| || ||||| | ||||||| ||||| ||||||||||| || | | Sbjct 1572 TAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAATTCATACCAAGCAT 1631 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTA 18892 || || || | |||||||| | ||| |||||||| || |||| Sbjct 1632 GTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAATTTTTA 1675 >seq7872 Length=1664 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 |||| |||||||| | || | || |||| || || | ||||||||| || |||| | Sbjct 764 TACCGCCTTGATCAACGTACCGAGCGGTATA-TTGTACAATCTTAACATAGGTACAAGCC 822 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 |||| || ||| |||| || ||| ||||||| |||| | |||| ||| | || Sbjct 823 CATTAGAAATATCATTTGTACCCAAAATATATGATCCATTTGCTCGAATACAATAAACAT 882 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 || ||||||||| ||||| ||| || ||| ||||| |||| | |||||||||| Sbjct 883 CAAGACCTATACCTCCTGCAGATTTTGAAATTGATGCACATTGTTTCAATGTATCATAAA 942 Query 48538 TTCCTTCTATACT 48550 | || || ||||| Sbjct 943 TACCATCGATACT 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560795826264960