Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq115302 233 2e-56 >seq115302 Length=2783 Score = 233 bits (258), Expect = 2e-56 Identities = 378/541 (70%), Gaps = 2/541 (0%) Strand=Plus/Plus Query 37157 TAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAA 37216 ||||| |||||||| | ||| ||||||||||| ||||| ||||| ||||| ||| | Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 37217 TTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGC 37276 ||| || ||||| || || |||||||| | || | |||||| | ||||||||| | ||| Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 37277 AAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA 37336 ||| ||| ||||||||| ||||| || ||||| ||||| | || |||| ||| || Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACC-AA 1924 Query 37337 AGTTGAACTATAATC-AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATT 37395 | || | || | |||||||||| | | ||| || || || ||| |||||| Sbjct 1925 AATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATG 1984 Query 37396 CAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTAT 37455 | ||||||| || || || | ||||| |||| |||| ||||| |||| Sbjct 1985 GTAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTAT 2044 Query 37456 CAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAA 37515 ||||||| | ||| ||||| || || |||| |||||| || || || ||||| || || | Sbjct 2045 CAATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGA 2104 Query 37516 AACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAA 37575 |||| | ||||| | || |||||| || | || | | | |||| ||||| || | Sbjct 2105 AACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTA 2164 Query 37576 CTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT 37635 | || |||||| ||||| || || ||||| || | ||||| || | |||| Sbjct 2165 CAATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACG 2224 Query 37636 TTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAA 37695 | || | | ||||||| || |||||||||| |||||||| ||| | ||||||| Sbjct 2225 GTTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAA 2284 Query 37696 A 37696 | Sbjct 2285 A 2285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590933266418560