Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq77412 192 5e-44 seq105237 156 3e-33 seq53184 152 4e-32 seq47011 145 6e-30 seq98090 114 1e-20 seq184144 95.1 1e-14 >seq77412 Length=2780 Score = 192 bits (212), Expect = 5e-44 Identities = 172/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| |||||||| |||||||||||||| || |||||||||| | || | | Sbjct 128 ACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACC 187 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 188 ATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTT 247 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| |||||| ||| ||| |||| | ||||| || | ||| ||||||||||||| Sbjct 248 GTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGAT 307 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||||||| |||||||| || || ||||| Sbjct 308 TGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq105237 Length=11214 Score = 156 bits (172), Expect = 3e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || || || ||||| ||||||||||| | | |||||| |||| || Sbjct 9091 ACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTCT 9032 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || |||||||| || | ||| |||||||| || ||||| ||||||||||| ||| Sbjct 9031 AATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGA 8972 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||| | || || || | ||| || ||||| |||| || ||| Sbjct 8971 ATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTTG 8912 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| || ||||| Sbjct 8911 CCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq53184 Length=5087 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | || || ||||| || ||||| ||||| || |||||||| | Sbjct 4652 CCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGAC 4711 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| ||||| ||||| || ||||| |||||||| || ||| Sbjct 4712 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 4771 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||| ||||||| | || | || || |||| ||| || Sbjct 4772 ATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACC 4831 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||||| || |||||||| ||||| || || ||||| Sbjct 4832 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| ||||||||||| ||||| |||||||| |||||||| || | | |||| | Sbjct 4435 ACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCC 4494 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | || || || || || || ||||| ||||| || || ||||| |||||||| Sbjct 4495 ATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTT 4554 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| ||||| ||| ||| | || | || ||||||| ||| || || | |||| Sbjct 4555 ATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGAT 4614 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||||||| || || || || ||||| Sbjct 4615 TGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 136 bits (150), Expect = 3e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| |||||||| ||||| || ||||| |||| | || | |||| ||| Sbjct 4898 ACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGACCATCTTCC 4957 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| || ||||| |||||||| || || || |||||||||||||| Sbjct 4958 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGTATTCCTTCTTTATCTTGG 5017 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| |||| | ||||| || | ||| ||||| | ||| | || || Sbjct 5018 ATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCTACTTCCAAAGTAATTGTCTTA 5077 Query 101441 CCGGTTAA 101448 |||||||| Sbjct 5078 CCGGTTAA 5085 >seq47011 Length=3271 Score = 145 bits (160), Expect = 6e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||||||||| || ||||| ||||| ||||||||||| | | || | |||| ||| Sbjct 1479 ACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTCC 1538 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || || ||||| |||||||| || ||||| |||||||| ||||| Sbjct 1539 AATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTGG 1598 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | ||| || || | || || ||||| || | || || Sbjct 1599 ATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTTT 1658 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||||||||||| || |||||| Sbjct 1659 CCCGTAAGTGTTTTTACAAAGATTTGCATG 1688 >seq98090 Length=13235 Score = 114 bits (126), Expect = 1e-20 Identities = 231/339 (68%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 || ||||||||||| || | |||||||| |||||||||||| | || || || || Sbjct 11147 AACTTTCGTTTACATCCACTATAATTCATGAAGCGTATTTTACCAAAAATGGGCCGTTCA 11088 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 ||| | ||||||| |||| | ||||||||||| || || |||| || || ||| Sbjct 11087 GCCCATCCTTGATCGTGGATTCCACCAATTGACCACATACAGCCCACATAGCCATTAGGA 11028 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA 13834 || | ||| || ||||| ||| || || ||||| || || | | ||| || Sbjct 11027 TCCCTTCCGTCTAAACTATATCGATCATTTAAATAGATAGCAATTCGGAGAGCTTCTTCT 10968 Query 13835 GGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCATT 13894 || || |||||| | |||||||| |||||||| |||| |||| |||| |||||| Sbjct 10967 GGACTTTCAGTCCATTCGAGGATTTTTTTCGCCCAATACATTCGCATAAATCCATGCATT 10908 Query 13895 TTGCCTTGCGTTTTAAGC---TGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTTCG 13951 || || | |||| | ||| ||||| || ||||| || ||||| ||| Sbjct 10907 TTCCC---CTCATTAACCAATTGTAATTGAGCTGCATTCCATAAATCGTCATACGTTAAT 10851 Query 13952 GAATTTTCTAATTCTCTTCTAT-TGTAACAATATTCCCG 13989 || ||||| || || | | || |||| ||||||| || Sbjct 10850 GATTTTTCCAACTC-GTCCGATGTGTACAAATATTCTCG 10813 >seq184144 Length=1006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| || | ||| ||||||||||| || | || |||||||| || |||| | || | Sbjct 425 CATCTTCAAGTTGTTTACCTGCAAAAATAAGGCGTTGTTGATCCGGTAGAATTCTTTGCT 366 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | |||||||| || | ||| | |||| | || || || | ||| ||| | ||||| | Sbjct 365 TTTCTTGAATCTTGTTTTTGATTATTTTGATGGTATCGGATGGTTCTACTGCTAGAGTAA 306 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||| ||| |||||||| |||||||| Sbjct 305 TTGTTTTTCCTGTTACAGTGTTTACAAAGATCTGCAT 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395375913590448