Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq77412 93.3 3e-14 seq105237 91.5 1e-13 seq53184 82.4 6e-11 >seq77412 Length=2780 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||||||||| |||||||| |||| | ||| | || ||| Sbjct 135 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCC 194 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || | || |||||||| | |||| || || ||||| Sbjct 195 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 254 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| ||| ||| | | | ||||| | || || || | || || || || Sbjct 255 ATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACTTCAAGAGTGATTGTCTTA 314 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| ||||| ||||| Sbjct 315 CCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq105237 Length=11214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||||| || ||| ||||| |||||||||||||| | ||| Sbjct 9100 AGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTG 9041 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || || || ||||| || || || |||||||| | |||| || || Sbjct 9040 CCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCT 8981 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| ||| | | | ||||| | || ||||| | || Sbjct 8980 TTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTG 8921 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| ||||||||||| || ||||| Sbjct 8920 ATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq53184 Length=5087 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || || || ||||| || || |||||||||||||||||| ||||| Sbjct 4423 GCCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGA 4482 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || |||| | || || | ||| || ||||| || || | || ||||| || | || Sbjct 4483 AAGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGG 4542 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || || || || || || ||| ||| | | | || |||| || || Sbjct 4543 AATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAAC 4602 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || || ||||| || || ||||| ||||| Sbjct 4603 CTCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380070050805072