Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq146712 178 7e-40 >seq146712 Length=6971 Score = 178 bits (196), Expect = 7e-40 Identities = 327/477 (69%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||||| | |||| |||||| ||||| ||||| || ||||||||| || || ||| Sbjct 3621 GGACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATC 3680 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | ||||||||| | ||||| || || | ||| ||||| || ||| || |||| | Sbjct 3681 CATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAA 3740 Query 26012 TCTAAGAAAT-CAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTT 26070 || ||||||| |||||||||| ||||| ||||||| ||| || ||||| || Sbjct 3741 TC-AAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGG 3799 Query 26071 TCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGG 26130 | ||| ||||||||||| ||||| | ||||| | |||| | ||| | |||| || Sbjct 3800 ACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGG 3859 Query 26131 AACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATC 26190 || | ||| | |||| || ||||| | ||| | ||||| | | || |||| Sbjct 3860 TACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATACA 3919 Query 26191 GTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGT 26250 ||| ||| || || || || || || |||||||||| |||||| | | | ||| Sbjct 3920 ATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGT 3979 Query 26251 ATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTG 26310 ||| |||| || | || ||||| | |||| ||| ||||| || || ||||| || Sbjct 3980 ATCATAAATACCATCGATACTATCTTCCGACATTGTTAACAAAAAGCATGACGATAACTG 4039 Query 26311 CGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 | ||| |||||| | ||| | || |||| |||||||| |||||| ||| Sbjct 4040 TGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAATATCTTTC 4096 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 |||||||| |||| | | ||||| || || | |||||||||||||||||||| ||| Sbjct 2390 GTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAAT 2449 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTT 24763 | |||||||||| |||||||| || || ||||| ||| Sbjct 2450 CCCATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTT 2488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252463725438800