Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01]
186,864 sequences; 541,697,276 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq146712 178 7e-40
>seq146712
Length=6971
Score = 178 bits (196), Expect = 7e-40
Identities = 327/477 (69%), Gaps = 2/477 (0%)
Strand=Plus/Plus
Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951
||||| | |||| |||||| ||||| ||||| || ||||||||| || || |||
Sbjct 3621 GGACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATC 3680
Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011
|| | ||||||||| | ||||| || || | ||| ||||| || ||| || |||| |
Sbjct 3681 CATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAA 3740
Query 26012 TCTAAGAAAT-CAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTT 26070
|| ||||||| |||||||||| ||||| ||||||| ||| || ||||| ||
Sbjct 3741 TC-AAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGG 3799
Query 26071 TCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGG 26130
| ||| ||||||||||| ||||| | ||||| | |||| | ||| | |||| ||
Sbjct 3800 ACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGG 3859
Query 26131 AACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATC 26190
|| | ||| | |||| || ||||| | ||| | ||||| | | || ||||
Sbjct 3860 TACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATACA 3919
Query 26191 GTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGT 26250
||| ||| || || || || || || |||||||||| |||||| | | | |||
Sbjct 3920 ATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGT 3979
Query 26251 ATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTG 26310
||| |||| || | || ||||| | |||| ||| ||||| || || ||||| ||
Sbjct 3980 ATCATAAATACCATCGATACTATCTTCCGACATTGTTAACAAAAAGCATGACGATAACTG 4039
Query 26311 CGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367
| ||| |||||| | ||| | || |||| |||||||| |||||| |||
Sbjct 4040 TGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAATATCTTTC 4096
Score = 84.2 bits (92), Expect = 1e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724
|||||||| |||| | | ||||| || || | |||||||||||||||||||| |||
Sbjct 2390 GTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAAT 2449
Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTT 24763
| |||||||||| |||||||| || || ||||| |||
Sbjct 2450 CCCATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTT 2488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252463725438800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |