Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq30765 111 2e-19 >seq30765 Length=14077 Score = 111 bits (122), Expect = 2e-19 Identities = 200/290 (69%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||| |||||||| || || |||| |||| || | ||| | |||||| ||||| Sbjct 10496 CCGGTGGCTATAACAAAGTCTTCTGGTTTTTCTAACTGTAACATCATCCACATTGCCTCA 10437 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 ||||||||| ||||| ||||| ||||| || || | ||| |||| | || | Sbjct 10436 ACATAATCTTGTGCATGACCCCAATCACGTTTTGAGTCTAAATTACCTAATTCGAAGTAC 10377 Query 47908 TC---TTGCTTACCTTCAGAGATTGCTTT---TAATGCTCTTGTAATCTTACGAGTTACA 47961 || ||| || | || | | ||| || | | ||||| ||||||||||| Sbjct 10376 TCCAATTGGTT----TAGGAAAAT--TTTAGCTACGGACCGAGTAATTTTACGAGTTACG 10323 Query 47962 AAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATT 48021 ||| |||| ||||||| ||| || |||||||| || || |||||| |||| | |||| Sbjct 10322 AAATTTTCTCCACGTCGTGGCGACTCATGATTGAACAGTATACCATTACAAACGAACATG 10263 Query 48022 CCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGC 48071 | |||| || |||||||| || ||||| | || || | |||||| Sbjct 10262 TCATATGCCTCGCGATAGTTTACAACAATCCAAAAACCGTACATTTTTGC 10213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663939938180480