Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq77412 163 5e-35 seq53184 158 2e-33 seq105237 141 2e-28 seq47011 131 3e-25 seq184144 105 1e-17 seq1971 84.2 4e-11 >seq77412 Length=2780 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| ||| | ||||| ||||| ||| || || ||| Sbjct 114 ATACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCG 173 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | | ||| || |||||||| |||||||| ||||| | |||||||| || Sbjct 174 GATAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGT 233 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| ||||| | ||| | |||| ||| || || || | || Sbjct 234 GGAATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCT 293 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || ||||| |||| |||||||| || |||||||| Sbjct 294 ACTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| ||||||| ||||| || ||| |||||||| | |||||||||||| || || Sbjct 533 ATCTTGGATTTTGGCTTTTACGTTCTCAATGGTATCGGATGGCTCAACTTCTAGTGTAAT 592 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| | |||||| || || |||||||| Sbjct 593 GGTTTTTCCTGTCAACGTTTTAACGAAGATTTGCAT 628 >seq53184 Length=5087 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | |||||||||| || | ||| | || || || || Sbjct 4642 AATTTGCATACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTT 4701 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | | ||| ||||||||||| || ||||| ||||| | ||||| Sbjct 4702 GTAATCCGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTG 4761 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||||||||| ||||||| ||||| ||| ||| |||||||| Sbjct 4762 ATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGA 4821 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| || || |||||||| |||| || ||||| || |||||||| Sbjct 4822 CGGTTCAACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | |||||||||| ||| | ||||| || || || || Sbjct 4870 AATTTGCATACCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTT 4929 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||||||| || | | ||| || |||||||| || ||||| ||||| | ||||| Sbjct 4930 GTAGTCGGATAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTG 4989 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || |||||||||||||||||||| || |||| ||||| ||| ||| || ||||| Sbjct 4990 ATCTGGTGGTATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGA 5049 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTA 193338 | || ||||| | ||| || || ||||| |||| Sbjct 5050 TGGTTCTACTTCCAAAGTAATTGTCTTACCGGTTA 5084 Score = 145 bits (160), Expect = 1e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||| | ||| | ||||| |||||| |||||| ||||| || | ||||| ||| || Sbjct 4441 TACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAAAGCGTTCGCCCATCTTC 4500 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || ||||| ||||| |||||||| | ||||| || || || ||||||||||||||||| Sbjct 4501 TAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTG 4560 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||||| ||| | ||| ||| ||||| || | ||||| |||| || || ||||| Sbjct 4561 GATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACCTCTAATGTGATTGTTTT 4620 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| |||| || || || || |||||||| Sbjct 4621 ACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 >seq105237 Length=11214 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193128 TATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 || |||||||| | | || || |||| ||| ||||| | ||| || ||||| || Sbjct 9115 TACATACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAA 9056 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 || || || ||||| ||| ||||||||||| || |||||||| | | |||||||| Sbjct 9055 TCAGACAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCT 8996 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 || || || ||||||||||| || ||||| | ||| | |||| ||| ||||| || | Sbjct 8995 GGTGGAATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGT 8936 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || | ||||||||||| ||||||||||| Sbjct 8935 TCGACCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq47011 Length=3271 Score = 131 bits (144), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || || || || | ||| || |||||||| || || |||||||| | Sbjct 1506 ATATTGTAATCCGACAAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGT 1565 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || || |||||||| ||||| ||||| | || | |||| |||||| Sbjct 1566 TGTTGATCTGGTGGAATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTA 1625 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | |||||| || || ||||| || || || || || ||||||||||| |||||| Sbjct 1626 TCGGATGGCTCAACCTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGC 1685 Query 193359 AT 193360 || Sbjct 1686 AT 1687 >seq184144 Length=1006 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193182 TTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGT 193241 ||||||||||| | ||| ||| || | |||||| || |||||||| | | ||| Sbjct 447 TTATAGTCGGAAATTGTTTGTTCATCTTCAAGTTGTTTACCTGCAAAAATAAGGCGTTGT 388 Query 193242 TGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCG 193301 ||||| || | |||| || || ||||| || ||| |||| || || || |||||| Sbjct 387 TGATCCGGTAGAATTCTTTGCTTTTCTTGAATCTTGTTTTTGATTATTTTGATGGTATCG 328 Query 193302 GAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | || ||| ||||||| || ||||| ||||||| || |||||||| || |||||| Sbjct 327 GATGGTTCTACTGCTAGAGTAATTGTTTTTCCTGTTACAGTGTTTACAAAGATCTGCATT 268 Query 193362 TTA 193364 || Sbjct 267 CTA 265 >seq1971 Length=4725 Score = 84.2 bits (92), Expect = 4e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||||||||| | ||| ||| || | |||||| || |||||||| | | Sbjct 710 AATGTTATAGTCGGAAATTGTTTGTTCATCTTCAAGTTGTTTACCTGCAAAAATAAGGCG 651 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || ||||| || | |||| || || ||||| || ||| |||| || || || | Sbjct 650 TTGCTGATCTGGTAGAATTCTTTGCTTCTCTTGAATCTTGTTTTTGATTATTTTGATGGA 591 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTA 193338 |||||| | || ||| ||||||| |||||||| ||||||| Sbjct 590 ATCGGATGGTTCTACTGCTAGAGTAATAGTTTTTCCTGTTA 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897552987252480