Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq115302 183 4e-41 seq53184 132 7e-26 seq105237 131 2e-25 seq47011 102 1e-16 >seq115302 Length=2783 Score = 183 bits (202), Expect = 4e-41 Identities = 363/538 (67%), Gaps = 4/538 (1%) Strand=Plus/Plus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||||||||||||| |||||| ||||| ||||| ||||||| |||||| ||| || || Sbjct 1764 ACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGTTCGTTCGAAAATGTCAA 1823 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | || | |||||| | ||||||||| ||||||||||| | | |||||| Sbjct 1824 ACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCGAAACTCCCACTAAAGAA 1883 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 || || || || ||||| || || | | |||| ||||| | ||||| Sbjct 1884 AATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAAATTCGCCGATTTGCTTGA 1943 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||||| | | ||||| || ||| | ||| |||| | | || | ||||| Sbjct 1944 AATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGTAAAGTTTCAACGGCATT 2003 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 || ||| || ||||| | |||| ||||| || || |||| | | ||||| Sbjct 2004 GAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCAATTAGAAGACTGTACAT 2063 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 || ||||| | ||||||| || || ||||| | || || | | || |||| Sbjct 2064 CTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAACAACGTGCTTCGGTTAT 2123 Query 18517 TTGAA--TCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||||| ||| | ||| | ||| || ||||| || || || ||||| |||| | | Sbjct 2124 TTGAACTTCTTGGCTGAAA--CGTTCAACTAAATTTTCGTTTACAATACCATCAGATGCT 2181 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 ||||||||||| | || | ||| || || |||| || || | ||| Sbjct 2182 GCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGTTTTAGTGCATCCCAA 2241 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||| | || ||||||||||| ||||||||||| | ||||||||| |||| ||| |||| Sbjct 2242 TCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAATGATGCTTCCGCCT 2299 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 ||||| | |||||||| |||||||||||||| || || ||||||||||| || | ||| Sbjct 1459 TATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAATGATATGAATTCCATG 1518 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTA 17989 || | |||||||| |||| || ||| |||||| | ||||| | ||| | | Sbjct 1519 AAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAATTCACCGAGTAAGCGA 1578 Query 17990 TCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 || || ||||| || | |||||| |||||||| || ||||||||||| || Sbjct 1579 TCAGCCACAAACTCAATATATTGAGACATCAATTCACAATTCATACCAAG 1628 >seq53184 Length=5087 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || ||||| ||||| || |||||||| || ||| ||| Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||||| || ||||| |||||| |||| | || || || ||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || |||||| | || ||||||||||| ||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTA 4438 Score = 100 bits (110), Expect = 4e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || ||||| ||||| || |||||||| || ||| || Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| ||||| || | |||||| | || || || ||||| | Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACA-- 4701 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| || | || ||||| || || Sbjct 4700 ACATCCAAAAGGAATCCACACTTCACTTGGT 4670 Score = 89.7 bits (98), Expect = 8e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 155844 TTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAA 155903 || || || || || ||||| || ||||| ||| || || | ||| |||||| ||| Sbjct 5085 TTAACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAA 5026 Query 155904 AATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGT 155963 || || |||||||||||||| ||||| ||||| |||||| | || || | ||| ||| Sbjct 5025 GCCAAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGT 4966 Query 155964 AAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGC 156021 || || | |||||| | || ||||| || || | | ||||||| || | || | Sbjct 4965 AAACAATTGGAAGATGGTCGTACATTATCCGACTACA--ACATCCAAAAGGAATCTACAC 4908 Query 156022 TTCATTTAGT 156031 ||||||| || Sbjct 4907 TTCATTTGGT 4898 >seq105237 Length=11214 Score = 131 bits (144), Expect = 2e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | ||||||||||| || || || || || | || |||||| Sbjct 8880 AAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCA 8939 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| |||||| || ||||||||||| || || ||||| Sbjct 8940 TCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGAT 8999 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | |||| ||| || || || | |||||| |||||| || || ||||| Sbjct 9000 CAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTAC 9059 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||||| ||| |||| | ||||| ||| Sbjct 9060 A--ATATCCAAAAGGAGTCGACATTACATTTGGTG 9092 >seq47011 Length=3271 Score = 102 bits (112), Expect = 1e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| | || ||||| || || || | || || || || Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || |||||| ||||| |||||||| || || ||||| ||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| || ||||| || | |||||| | || || || ||||| ||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 || ||||| || | || |||||||||||| Sbjct 1507 AT--CCAAAAGGAATCCACACTTCATTTAGTG 1478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730162493382400