Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq77412 172 1e-37 seq53184 165 2e-35 seq105237 159 7e-34 seq115302 138 2e-27 seq47011 136 8e-27 seq83339 86.0 1e-11 >seq77412 Length=2780 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || ||||| | |||| ||||| || || ||||| Sbjct 114 ATACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCG 173 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| |||||||||||||| ||||||||||| | |||||||| ||| Sbjct 174 GATAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGT 233 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| ||| ||||| || | ||||| | |||| Sbjct 234 GGAATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCT 293 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || ||||| ||||| ||||| | || || ||||| Sbjct 294 ACTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | ||| ||||| | ||| | || || ||| || || || Sbjct 627 ATGCCACCACGAAGACGAAGTACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 686 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 |||||||| || |||| |||||||||||||||||||||||||| | |||| Sbjct 687 GATAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTT 738 >seq53184 Length=5087 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | ||| ||||| | |||| || || ||| || || || Sbjct 4877 ATACCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCG 4936 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| |||||||||||||||||||||||||| | |||||||| ||| Sbjct 4937 GATAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGT 4996 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 |||||||||||||||||||| || || |||||| || || | || || | |||| Sbjct 4997 GGTATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCT 5056 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||||| | |||||| || ||||| ||||| Sbjct 5057 ACTTCCAAAGTAATTGTCTTACCGGTTAA 5085 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||| || || | || | || || ||| || ||||| Sbjct 4649 ATACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCC 4708 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || ||||||||||||||||||||||| | |||||||| ||| Sbjct 4709 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGT 4768 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| ||||||||| || | ||| |||| ||| Sbjct 4769 GGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCA 4828 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || || |||||||||||||| || || | || || ||||| Sbjct 4829 ACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||||||||||||||| | |||| |||||| ||||| || ||||| Sbjct 4424 CCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAA 4483 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | ||||| || || || ||||| | ||||| || ||||| Sbjct 4484 AGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGA 4543 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||||||||| ||||| ||| ||||| || | ||| |||| ||| || Sbjct 4544 ATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACC 4603 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || || |||||||||||||| || || | || || ||||| Sbjct 4604 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 >seq105237 Length=11214 Score = 159 bits (176), Expect = 7e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || |||||||| || | ||| || |||||| |||||| Sbjct 9112 ATACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCA 9053 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||||| |||| || |||||||| || ||||| || | | |||||||| ||| Sbjct 9052 GACAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGT 8993 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || |||||| ||| ||||| || | |||||| | ||| Sbjct 8992 GGAATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCG 8933 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || || || |||||||| | ||| || |||||||| Sbjct 8932 ACCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq115302 Length=2783 Score = 138 bits (152), Expect = 2e-27 Identities = 351/536 (65%), Gaps = 14/536 (3%) Strand=Plus/Plus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| ||||||||| ||||| || ||||| || ||||| | ||| || ||| || || Sbjct 1764 ACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGTTCGTTCGAAAATGTCAA 1823 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 |||||||| | || | ||||| | ||||||||| ||||| ||||| | | |||||| Sbjct 1824 ACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCGAAACTCCCACTAAAGAA 1883 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA- 50001 || || || || || ||||| || || | | | ||||| ||| || || Sbjct 1884 AATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA-ATTCGCCGATTTGCTTG 1942 Query 50002 ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 | ||||| | || ||||| || ||||| ||||| | | | |||| | |||| | || | Sbjct 1943 AAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGTAAAGTTTCAACGGCAT 2002 Query 50062 TAAATAAT---TCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAG 50115 | ||||| ||| | |||| || |||| | | Sbjct 2003 TGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCA------ATTAGAAGAC 2056 Query 50116 AATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTT 50175 ||||| || ||||| ||| |||||| || |||||||| || || | ||||| Sbjct 2057 TGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAACAACGTGCTT 2116 Query 50176 CTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 50235 | | |||||||| ||| |||||||||||||| || |||||||||||||| Sbjct 2117 CGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACAATACCATCAG 2176 Query 50236 ATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 50295 |||||||||| ||||| | |||| |||||| || |||| ||||| | Sbjct 2177 ATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGTTTTAGTGCAT 2236 Query 50296 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 ||||| | | || ||||||| || |||||||| |||||||||||||||| Sbjct 2237 CCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAATGATGCT 2292 Score = 105 bits (116), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 49575 TCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCT 49634 || |||||||| || | ||| || | |||||||||||||| || ||| |||||| | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 49635 ATCAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAA 49694 |||| || | ||| | ||| || ||||| |||| |||||| ||||| ||||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 49695 TTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCTTTTTCTATTTCTA 49752 |||||||| | | || | ||| || ||||| | ||| |||| ||| |||| || Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAATTTTTA 1675 >seq47011 Length=3271 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | |||||||| | || | || || |||||| ||||| || Sbjct 1460 ACCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGA 1519 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||||||||||||||| || ||||| | |||||||| ||||| Sbjct 1520 CAAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGG 1579 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| |||||| || ||||| |||| ||| || | || || Sbjct 1580 AATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAAC 1639 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || | |||||| | ||| || ||||| Sbjct 1640 CTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 >seq83339 Length=4157 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 125329 TGTTGTTCCCATACTATATCGTTAGTTTCCCAATCTTTTAAACCAAGATCGCAATAGAAA 125388 |||| ||| | ||| ||| |||| ||||||||||||||||| | | | |||| |||| Sbjct 1678 TGTTCTTCGAGTCCTAAATCATTAGGTTCCCAATCTTTTAAACAACCAGCACAATGGAAA 1619 Query 125389 CATTTGACCTTATCACCA-CAATTAGTATAATAAAAACCAGCTTCAGCTAGTTCTTCGGG 125447 | || || | ||| ||| | ||| ||| |||||||||||||| || || || || Sbjct 1618 CCCTTTACTTCATCTCCAACTCCTAGG-TAAAAAAAACCAGCTTCACTTAAATCATCTGG 1560 Query 125448 AGTTTGTTTTAAACTCTGTGGCCAATTTTTAAAA 125481 ||||||||||| | |||||| ||| ||||| Sbjct 1559 GGTTTGTTTTAATGATTTTGGCCAGTTTGTAAAA 1526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982122962906400