Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq77412 158 2e-33 seq53184 152 9e-32 seq115302 149 1e-30 seq105237 132 9e-26 seq47011 118 2e-21 >seq77412 Length=2780 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || ||||| | |||| ||||| ||| || ||||| Sbjct 114 ATACCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCG 173 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || |||||||||||||| ||||| ||||| | ||||| || ||| Sbjct 174 GATAATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGT 233 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| ||| ||||| || || ||||| | |||| Sbjct 234 GGAATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCT 293 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || ||||| ||||| ||||| | ||| || ||||| Sbjct 294 ACTTCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq53184 Length=5087 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| |||||||||||||| | |||| |||||| |||||| || || || Sbjct 4424 CCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAA 4483 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || || | ||||| || || |||||||| | |||||||| ||||| Sbjct 4484 AGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGA 4543 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||||||||| ||||| ||| ||||| || ||||| |||| ||| || Sbjct 4544 ATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACC 4603 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || |||||||||||||| || || | ||| || ||||| Sbjct 4604 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | ||| || || | || | || || || || ||||| Sbjct 4649 ATACCACCACGTAGACGAAGTACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCC 4708 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || ||||||||||||||||| ||||| | ||||| || ||| Sbjct 4709 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGT 4768 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| ||||||||| || ||||| |||| ||| Sbjct 4769 GGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCA 4828 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || || |||||||||||||| || || | ||| || ||||| Sbjct 4829 ACCTCTAATGTGATTGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | ||| ||||| | |||| || || || || || || Sbjct 4877 ATACCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCG 4936 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || |||||||||||||||||||| ||||| | ||||| || ||| Sbjct 4937 GATAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGT 4996 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 |||||||||||||||||||| || || |||||| || || || || || | |||| Sbjct 4997 GGTATTCCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCGGATGGTTCT 5056 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||||| | |||||| || ||||| ||||| Sbjct 5057 ACTTCCAAAGTAATTGTCTTACCGGTTAA 5085 >seq115302 Length=2783 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||| || ||||| | |||||||||||||| || |||||||| || || |||||||| | Sbjct 1451 ATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAATGATATGA 1510 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATA 38949 | | ||| || | |||||||||||||| || ||| |||||| | |||| || | Sbjct 1511 ATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAATTCACCGA 1570 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 ||| | ||| |||||||| |||| |||||| |||| ||||||||||||||||| | | Sbjct 1571 GTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAATTCATACCAAGCA 1630 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCTTTTTCTATTTCTA 39054 || | ||| || ||||| | ||| |||| ||| |||| || Sbjct 1631 TGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAATTTTTA 1675 Score = 120 bits (132), Expect = 5e-22 Identities = 338/530 (64%), Gaps = 2/530 (0%) Strand=Plus/Plus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| |||||||| ||||| |||||||| || ||||| | ||| || ||| || || Sbjct 1764 ACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAGTTCGTTCGAAAATGTCAA 1823 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 |||||||| | || | ||||| | ||||||||| ||||| ||||| | | |||||| Sbjct 1824 ACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCGAAACTCCCACTAAAGAA 1883 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA- 39303 || || ||||| || ||||| || || | | | ||||| ||| || || Sbjct 1884 AATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA-ATTCGCCGATTTGCTTG 1942 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 ||||||| | || |||||| || ||||| ||||| | | | |||| | |||| | || | Sbjct 1943 AAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGTAAAGTTTCAACGGCAT 2002 Query 39364 TAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 | ||||| | | |||| Sbjct 2003 TGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATCAATTAGAAGACTGTACA 2062 Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 | || ||||| ||| |||||| || |||||||| || || | |||||| | Sbjct 2063 TCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAAACAACGTGCTTCGGTTA 2122 Query 39484 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 |||||||| ||| |||||||||||||| || |||||||||||||||||||| Sbjct 2123 TTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTACAATACCATCAGATGCTG 2182 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 |||| ||||| | || | |||||| || |||| ||||| |||||| Sbjct 2183 CGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGGTTTTAGTGCATCCCAAT 2242 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | | || ||||||| || |||||||| ||||||||| |||||| Sbjct 2243 CAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAATGATGCT 2292 >seq105237 Length=11214 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || |||||||| || | ||| || ||||| ||||| Sbjct 9112 ATACCACCACGGAGACGGAGCACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCA 9053 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || |||||||| || |||||||| | | ||||| || ||| Sbjct 9052 GACAATGTTCTGCCATCTTCTAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGT 8993 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || |||||| ||| ||||| || |||||||| | ||| Sbjct 8992 GGAATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCG 8933 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || ||||| || || || |||||||| | || || |||||||| Sbjct 8932 ACCTCAAGGGTGATGGTCTTGCCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq47011 Length=3271 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || | |||||||| | || | || || ||||| ||||| || Sbjct 1460 ACCGCCACGAAGACGGAGCACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGA 1519 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || ||||||||||||||||| |||||||| | ||||| || ||||| Sbjct 1520 CAAGGTACGCCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGG 1579 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| ||||| |||||| || ||||| |||||||| || | || || Sbjct 1580 AATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAAC 1639 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || || | |||||| | || || ||||| Sbjct 1640 CTCAAGGGTTATGGTCTTTCCCGTAAGTGTTTTTACAAAGATTTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903021783331200