Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq146712 138 3e-27 seq115302 136 1e-26 seq44059 118 3e-21 >seq146712 Length=6971 Score = 138 bits (152), Expect = 3e-27 Identities = 609/954 (64%), Gaps = 14/954 (1%) Strand=Plus/Plus Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTG 155459 |||| || || | ||| || || ||||| || | ||| ||||| || |||| | Sbjct 3141 AATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGT 3200 Query 155460 CTTGTCTTCTTGT-TTGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAA 155518 ||| |||| | |||| || |||| |||||||| || |||||||||||| | || Sbjct 3201 TTTG-CTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCAC 3259 Query 155519 TACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCT---CATTTACAAA 155575 | || || || ||| || || | | || || |||| || | |||||||||| Sbjct 3260 AATTTTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAACATTTACAAA 3319 Query 155576 CATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATT 155634 |||| || | || ||||| | |||||| || || || | | | | || ||| Sbjct 3320 CATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCATCTTTTGACGAAA-ATT 3378 Query 155635 CTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATT 155694 ||||||| || |||| || |||| || ||||| || | ||| | || || |||| Sbjct 3379 CTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATT 3438 Query 155695 TACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 | | ||||||||||| || || || || || || ||| || || | || || | Sbjct 3439 TTCGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAA 3498 Query 155755 GAATCTTTAGCCAGAGGTCACGGGCATTAA-TTTGCTTGTTGTAT-CTGCCTTCCGACTC 155812 ||| ||| || |||| || | ||||| || | | | |||||| || Sbjct 3499 TAATAGCATACCATAGAGATTGGGCTTTCACTTTGC--GTAGAAAACGGCCTTCGCTTTC 3556 Query 155813 ATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTT 155872 ||||||| ||| || || | || || || ||||||| || ||||| || | Sbjct 3557 ATATTTCTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTC 3616 Query 155873 ATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACT 155932 | || || | | |||||| || ||| | || |||| |||||||| || Sbjct 3617 GTGAGGACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGG 3676 Query 155933 CGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCG 155992 ||| | ||||| || | || | ||| | ||||| | || ||| ||| Sbjct 3677 TATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTT 3736 Query 155993 TAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC 156052 || || | ||||| ||||||| ||| || || ||||| || ||||| || Sbjct 3737 TAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCC 3796 Query 156053 ATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCAT 156109 | ||| ||||| ||||| || ||||||||||| |||||| | || | || || Sbjct 3797 GGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAA 3856 Query 156110 AGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAAC 156169 ||| | || ||||| ||| | ||||| || || ||||| || || || |||| Sbjct 3857 AGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAAT 3916 Query 156170 ATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTAC 156229 | ||||| || || || ||||| |||| |||| |||||| || |||| || | Sbjct 3917 ACAATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAA 3976 Query 156230 AGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAA 156289 |||| ||||||| || ||| ||| || ||||| || | | |||| || ||| Sbjct 3977 TGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAACAAAAAGCATGACGATAA 4036 Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 || ||||| ||||||||||| || | || |||| |||||| | ||||| Sbjct 4037 CTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAATA 4090 >seq115302 Length=2783 Score = 136 bits (150), Expect = 1e-26 Identities = 348/522 (67%), Gaps = 6/522 (1%) Strand=Plus/Minus Query 133138 ATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTAC 133197 ||||||||| | ||||| || |||| |||||| || | ||||| || || | Sbjct 2286 ATTTTGGACAGCTGAAGAAGTTGACCTATCAAAAGACATGGCTGATTGGGATGCACTAAA 2227 Query 133198 TGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTAT 133257 | |||| || |||||||| | | || ||||| || || ||||||||| Sbjct 2226 ACCGTCTGAACGTCACTTTATTTCGCACGTACTTGCATTTTTCGCAGCATCTGATGGTAT 2167 Query 133258 TGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGC 133317 ||| |||||||||| ||| || | |||||||||| | ||||||| ||| Sbjct 2166 TGTAAACGAAAATTTAGTTGAACGTTTCAGCCAAGAAGTTCAAATAACCGAAGCACGTTG 2107 Query 133318 CTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAAT 133377 || || ||| | || ||||| ||||||||| | ||||| | || | |||||| Sbjct 2106 TTTCTACGGGTTTCAAATTGCCATGGAAAATGTTCATTCCGAGATGTACAGTCTTCTAAT 2047 Query 133378 TGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATT 133437 |||||| || ||| |||| | || || ||||||| ||| || | | || Sbjct 2046 TGATACGTATATCCGAGATCCAAAAGAGCGTGACTTTTTATTCAATGCCGTT-GAAACTT 1988 Query 133438 T-CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGA-TCCAGGACAAGCGTGCG 133495 | || ||| | ||||||||| |||||||||| | |||||| | || | || || ||| Sbjct 1987 TACCATGTGTAAAAAAGAAAGCTGACTGGGCCCTACAATGGATTTCAAGCAAATCG-GCG 1929 Query 133496 AGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCG 133555 | ||||| | ||| | |||| || || | || || || ||||| || ||||| | | Sbjct 1928 AATTTTGGTGAACGTATTATTGCATTCGCAGCGGTGGAAGGAATTTTCTTTAGTGG-GAG 1870 Query 133556 TTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAA 133614 || || || || |||||| | ||||| ||||| | | || || || ||||| || Sbjct 1869 TTTCGCATCCATATTTTGGTTGAAAAAACGTGGCCTCATGCCAGGTTTGACATTTTCGAA 1810 Query 133615 CGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 |||||| || ||||| ||||| | | | ||| || ||||| Sbjct 1809 CGAACTAATATCAAGAGACGAAGGATTACACTGTGATTTTGC 1768 >seq44059 Length=11751 Score = 118 bits (130), Expect = 3e-21 Identities = 231/340 (68%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| | ||| |||||||||||||||||||| || || | | | | | || | | Sbjct 5846 CCAACTGAATCTATTTCGTCAATGAAAATCACGCATGGTGCACGATCTTTTGCTGCTTTA 5787 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 |||| |||| ||||||| ||| || | || ||| | ||| |||| || | | | Sbjct 5786 AATAGGTCTCGTACACGGCGTGCACCTTGCCCTACAAGAACTTCATCAAACTCTGGACCA 5727 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 | | || | |||| |||| ||||| || || || || | || | | || ||| Sbjct 5726 GCAGCATGGAAAAATGGTACACCAGCTTCTCCAGCAACAGCACGAGCTAATAAAGTTTTA 5667 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || || || || ||||| | |||| |||||| ||||||| |||| | || | | | Sbjct 5666 CCCGTACCCGGAGGTCCTACCAATAAAACTCCTTTTGGTAGTTTTCCACCCAAATTCGAA 5607 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| || ||||||||||||||||| || | ||| | | ||| | ||||| || || Sbjct 5606 AATTTATCGGGGCTCTTTAAAAATTCAACGACTTCTTTTAATTCTTGCTTTGCTTCGTCG 5547 Query 289330 CATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 || ||| |||||| | || || | ||| ||||| |||| Sbjct 5546 CAACCTTTAACATCATCGAACGTTACATTTATATC-TTCT 5508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468293781661168