Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq146712 347 1e-90 seq77412 167 2e-36 seq53184 154 1e-32 seq47011 131 2e-25 seq105237 118 1e-21 seq184144 91.5 1e-13 >seq146712 Length=6971 Score = 347 bits (384), Expect = 1e-90 Identities = 1141/1760 (65%), Gaps = 74/1760 (4%) Strand=Plus/Plus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 ||||| || ||||| | ||| || | || ||||| ||||| | |||||||||||||| Sbjct 2381 TTATCAACGGTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCCA 2440 Query 138214 GTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 |||||||| ||||| |||| | | || | || || ||||| || ||||| | || Sbjct 2441 GTTTTTAATCCCATCTTCCAAC-CATAAAAATGAATAGAAGTTAGCTTTCCGTAATTTGG 2499 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | ||| ||||||||||| || ||||| || ||||| || ||||| ||| Sbjct 2500 TTCGGCTACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGATCCGCGGC 2559 Query 138333 CATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392 ||| ||||||| ||||| | || ||||| || || || || ||| ||||||| | Sbjct 2560 CATCTTAATTAGCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCACGAATTTC 2619 Query 138393 TCGCGGTATTGTTGCAATATTTTGAAT-------------GC-----TC----------- 138423 | |||| ||| | ||||||||||||| || || Sbjct 2620 TTGCGGGATTTCTTCAATATTTTGAATTGAACCATTTGCCGCAATANTCAATATTTTGAA 2679 Query 138424 -----CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGA 138478 || || ||||||| | ||||||| | |||||||| | |||||| || | | Sbjct 2680 TTAAACCATTTACCGCAATAACGCGATTTTTTATGTCATCATCCCACAGATCTAATTCGG 2739 Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 | ||||| ||||||| || ||||| || ||||||||||| | | ||| || | Sbjct 2740 TTAAGTCCTTTATCAAATGGTGGTTTACTACTTGAAATTCACCAGAAAGTACACGTCT-- 2797 Query 138539 CGTAAATGTTGTTG--GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 |||| || ||| || | || || || ||||| || ||||||| ||| || || || Sbjct 2798 CGTATATACGTTTGACGTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTGCGGT 2857 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | || |||||||| || | | ||||||||| | | || || | |||| Sbjct 2858 AGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCTTCGCGATTTT 2917 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 | |||| | || | ||| ||||| ||||| | || |||| ||||||||||| ||||| Sbjct 2918 TGCCTTCAACGCGGTCCAATCCCATAAATCTGTTGGAGTTTTATTCCACATATCATACTG 2977 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 || || || |||| | ||||| ||||| || | ||||| || || | || || Sbjct 2978 CAAGATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGTAGGTGCCTAATTTTTCAGC 3037 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 | ||| || || || | ||||| ||||| || || ||| ||| ||||| || | Sbjct 3038 TAGTTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCTGGTTTAA 3097 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCAT-GCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 ||| | ||||| | || || || |||| || | | |||| || || |||| | Sbjct 3098 TAATTGTGCCTCTTCACTTTCATA-TGCATAACGCATTAATATGAATGCATCAGCCATAC 3156 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAG 138955 |||| || || | || | || ||||| | || ||| || |||||| | ||| | Sbjct 3157 CTTGTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTTTGCTTCAGGGATTG 3216 Query 138956 GATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCT 139015 |||| || || ||||| || ||||| ||||||||| || | ||||| | || Sbjct 3217 GATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGT-AACTTCT 3275 Query 139016 TTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTG 139074 || | | | | |||||||||| || | || || | ||||| | ||| Sbjct 3276 TTCAACTTGTTAAAATCGTAT---------TTTTTTTCATTAACATTTACAAACATATTG 3326 Query 139075 ACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTC-GGGGTCGCTGTATTCGACAAT 139133 | || || |||| || || || || ||||| || | || |||| ||||| Sbjct 3327 AGGGCGATTGACGCTAAATTACAAACGGCTACTTCATCTTTTGACG-AAAATTCTACAAT 3385 Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193 ||||| ||||||||| ||| || || ||||| | ||||||||||||| |||||| || Sbjct 3386 TTCGGTACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATT 3445 Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT-GA 139252 |||||||||||| || ||||||||||| |||||||| ||||| | || ||||| | Sbjct 3446 ACAAGCATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAGC 3505 Query 139253 ATTTGAACA-AGTCCCT-AGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTT 139310 || | || || | |||| | || || | || | | |||| || || || Sbjct 3506 AT---ACCATAGAGATTGGGCTTTCACTTTGCGTAGAAAACGGCCTTCGCTTTCATATTT 3562 Query 139311 TTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGG 139370 || || |||| || ||| || || | || |||| | |||| | || ||| Sbjct 3563 CTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTCGTGAGG 3622 Query 139371 ACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCA 139430 |||||| | ||||| | | || || | |||||| |||| || | || || ||||| Sbjct 3623 ACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCA 3682 Query 139431 CAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTT 139490 | || | | || ||| || ||| | || || ||| | || || | | Sbjct 3683 TAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATC 3742 Query 139491 AAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG 139550 ||| || ||||||| ||| | ||||| ||||| ||||| ||||| | |||||| || Sbjct 3743 AAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACG 3802 Query 139551 TTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTC 139607 |||| ||||||||||| |||| || ||| ||||||| | || | |||| || | Sbjct 3803 TTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGGTAC 3862 Query 139608 CAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTCGGACGT 139663 || || | | | || || || || | ||| | || ||||| | Sbjct 3863 AAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTTT----GCTCGAATAC 3918 Query 139664 CATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATG 139723 ||| ||||| | ||| || || || || |||| || ||||| | || | |||| Sbjct 3919 AATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATG 3978 Query 139724 TCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTT 139783 | || || ||||| || || || ||| ||| || | || |||||||||||| | | Sbjct 3979 TATCATAAATACCATCGATACTATCTTCCGACATTGTTAACAAAAAGCATGACGATAACT 4038 Query 139784 GCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTT-C 139842 | ||| | || || || ||||||| || || || || ||||| || | ||| | Sbjct 4039 GTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAA-ATATCTTTCC 4097 Query 139843 GACATCAATTCGTACGTTTC 139862 || | || | ||||||||| Sbjct 4098 GATAATAAATTGTACGTTTC 4117 >seq77412 Length=2780 Score = 167 bits (184), Expect = 2e-36 Identities = 166/212 (78%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| |||||||||| || || || || ||||||||| | | Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||| |||||||||||||||||||| || || |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATG-TCAGATTAT 24880 |||||||| ||||||||||| ||||| |||| ||| ||| |||| || ||||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGT---ACATTATCCGATTAC 167 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| ||||| ||||| || ||||| Sbjct 166 AACATTCAAAAAGAATCTACACTTCATTTGGT 135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 24749 GAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGA 24808 ||||| ||| | | || ||| | || | || ||| || ||||||||||| |||||| Sbjct 526 GAAGTGGAACCATCAGATACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGA 467 Query 24809 ATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAA 24866 || || || |||||||||||| | || || || || || || | || ||| ||| Sbjct 466 ATTCCACCAGATCAACAACGTCTTATTTTCGCTGGCAAGCAATTAGAAGATGGTCGT--- 410 Query 24867 ACATG-TCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || ||||| ||||||||||||||||| ||||| || ||||| Sbjct 409 ACATTATCCGATTACAACATTCAAAAGGAATCCACACTTCATTTGGT 363 >seq53184 Length=5087 Score = 154 bits (170), Expect = 1e-32 Identities = 150/190 (79%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 24726 TAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAAC 24785 |||||||||| || ||||| | ||||||||| | ||||||| | |||| |||||| Sbjct 5084 TAACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAAG 5025 Query 24786 AAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGA 24845 ||||||||||| |||||||||||||| || |||||||||||||| |||||||| || | Sbjct 5024 CCAAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTA 4965 Query 24846 AACAGCTGGAGGAT--TCGAGAAACATG-TCAGATTATAACATTCAAAAGGAATCGACAC 24902 |||| |||| ||| ||| |||| || || || ||||| ||||||||||| |||| Sbjct 4964 AACAATTGGAAGATGGTCGT---ACATTATCCGACTACAACATCCAAAAGGAATCTACAC 4908 Query 24903 TACACTTGGT 24912 | || ||||| Sbjct 4907 TTCATTTGGT 4898 Score = 131 bits (144), Expect = 2e-25 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || |||| |||||||| || || | || || ||| | || Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| || || ||||| ||||||||||| || || |||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 |||||||| |||||||| || ||||| | || ||| ||| |||| ||| ||||| Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGT---ACATTGTCGGATTAC 4702 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||||||||| ||||| |||||||| Sbjct 4701 AACATCCAAAAGGAATCCACACTTCACTTGGT 4670 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || |||| |||||||| || || | || || ||| | | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || |||||||| ||||||||||| || || || ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| || || ||||| |||||||| || ||| | ||| | || || || || Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || ||||| || || || || || | ||||| ||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGGC 4423 >seq47011 Length=3271 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||| |||||| | ||||| || || || || || || || || || || || |||| | Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGA-GCCATC 1629 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | |||| || || || ||||||||||||||||| || || || ||||| Sbjct 1628 CGATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCA 1569 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| || || || || ||||| |||| ||| | | | | |||| ||||| || Sbjct 1568 ACAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAA 1509 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||||||||| ||||| || || ||| Sbjct 1508 TATCCAAAAGGAATCCACACTTCATTTAGTG 1478 >seq105237 Length=11214 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || || || || || || || || || ||| | | Sbjct 8883 ATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCATCA 8942 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || |||||||| || || || |||||| Sbjct 8943 GATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGATCAA 9002 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || ||||| | || ||| |||| |||| ||||| || Sbjct 9003 CAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTACAAT 9062 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| |||||| |||| |||||| Sbjct 9063 ATCCAAAAGGAGTCGACATTACATTTGGTG 9092 >seq184144 Length=1006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/172 (72%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 24689 AAACTGATTGATACGA-TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCT 24747 |||||| ||| | || ||||||||||| | || || |||| || ||||| ||||| || Sbjct 253 AAACTGTTTGTTTAGAATGCAGATCTTTGTAAACACTGTAACAGGAAAAACAATTACTCT 312 Query 24748 CGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 | ||||||| | |||| || | ||| | ||| | ||||| ||||| || || | Sbjct 313 AGCAGTAGAACCATCCGATACCATCAAAATAATCAAAAACAAGATTCAAGAAAAGCAAAG 372 Query 24808 AATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| | || ||||||||||| | || ||||| || ||||| || || ||| Sbjct 373 AATTCTACCGGATCAACAACGCCTTATTTTTGCAGGTAAACAACTTGAAGAT 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448846729185920