Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq90862 214 1e-50 seq105237 96.9 3e-15 seq53184 84.2 2e-11 >seq90862 Length=4261 Score = 214 bits (236), Expect = 1e-50 Identities = 283/391 (72%), Gaps = 4/391 (1%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTC--TTTTTAGCGGACACGA 34312 || ||| | ||||| || || || || || |||| ||| | |||||||| || || | Sbjct 1367 CCATGAAAGCCGCAAGCCTTACATCCTTGC--GATATTGTACCCTTTTTAGCCGATACCA 1310 Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 | ||| ||||| || || |||||||| |||||||| ||||| || || || || |||| Sbjct 1309 ATAACTCTGTCTCGGGATTATCACATTCTGGACACAATACAAATTTTCGAATAAATCCAT 1250 Query 34373 CAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTT 34432 | | | || ||||| || | | || || || || ||||| || || ||||| |||| Sbjct 1249 CCAATAAATCTTGTAATTTTGCTGCATCATGCGACCCATTGACAATAAAACGTTCATTTT 1190 Query 34433 TGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGG 34492 | ||||||| ||| ||||| ||||||| ||||| || || || || || || || | | Sbjct 1189 TATAATCGAACTGTGTTTGGGCGCCCAATTCGCAACCAAAATATTTAGTTGGATATGTCG 1130 Query 34493 CCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGT 34552 | |||||||||| ||| || || | || | ||| || || || ||||| || ||||||| Sbjct 1129 CGGGACGTCCAATCGCTTTAGCAACCTCTGCCATATTAACAATAACAGTTTTTATGCCGT 1070 Query 34553 TGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 | || || || || || || || ||||| ||||||||||| || |||||||| || | Sbjct 1069 TACCTTTACCCTCCACTTTAGCATTAATGCGAGGCATTTTGTAACGATAGAACGCATCGG 1010 Query 34613 CCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||||| || || || || || || ||||| Sbjct 1009 TAACATTACGATTTACATTTACGGTACCCAT 979 >seq105237 Length=11214 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| ||||| || || ||||| ||||| ||| | || || || Sbjct 8880 AAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCA 8939 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | || ||| || ||| || |||||||| | || ||| Sbjct 8940 TCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGAT 8999 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | || |||| ||| || ||||| | || |||| ||||||| || | |||||| Sbjct 9000 CAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTAC 9059 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| || || || || || ||||| Sbjct 9060 AATATCCAAAAGGAGTCGACATTACATTTGGTG 9092 >seq53184 Length=5087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || |||||||| || ||||| || || | || || || | Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | |||||| || ||| || |||||||| | || |||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| |||||||| | || |||| | ||| || ||||||||||| Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || | ||| |||| Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGT 4670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411901392475952